Strain Fitness in Shewanella loihica PV-4 around Shew_0968

Experiment: sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0967 and Shew_0968 are separated by 234 nucleotidesShew_0968 and Shew_0969 are separated by 63 nucleotides Shew_0967: Shew_0967 - aldehyde dehydrogenase (RefSeq), at 1,110,182 to 1,111,678 _0967 Shew_0968: Shew_0968 - 3-mercaptopyruvate sulfurtransferase (RefSeq), at 1,111,913 to 1,112,767 _0968 Shew_0969: Shew_0969 - FAD dependent oxidoreductase (RefSeq), at 1,112,831 to 1,114,135 _0969 Position (kb) 1111 1112 1113Strain fitness (log2 ratio) -1 0 1at 1111.283 kb on - strand, within Shew_0967at 1111.309 kb on + strand, within Shew_0967at 1111.598 kb on - strandat 1111.869 kb on - strandat 1111.899 kb on + strandat 1111.992 kb on + strandat 1112.127 kb on - strand, within Shew_0968at 1112.334 kb on - strand, within Shew_0968at 1112.487 kb on - strand, within Shew_0968at 1113.134 kb on - strand, within Shew_0969at 1113.335 kb on + strand, within Shew_0969at 1113.509 kb on + strand, within Shew_0969at 1113.762 kb on - strand, within Shew_0969

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 100 mM
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1,111,283 - Shew_0967 0.74 +0.4
1,111,309 + Shew_0967 0.75 -0.1
1,111,598 - +0.2
1,111,869 - +0.3
1,111,899 + -0.0
1,111,992 + -0.1
1,112,127 - Shew_0968 0.25 -0.0
1,112,334 - Shew_0968 0.49 -1.3
1,112,487 - Shew_0968 0.67 -0.0
1,113,134 - Shew_0969 0.23 +0.5
1,113,335 + Shew_0969 0.39 +0.3
1,113,509 + Shew_0969 0.52 -0.1
1,113,762 - Shew_0969 0.71 +0.3

Or see this region's nucleotide sequence