Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0085

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0084 and Psest_0085 are separated by 134 nucleotidesPsest_0085 and Psest_0086 are separated by 354 nucleotidesPsest_0086 and Psest_0087 are separated by 71 nucleotides Psest_0084: Psest_0084 - alpha-ketoglutarate TRAP transporter, 4TM/12TM components (from data), at 85,079 to 87,103 _0084 Psest_0085: Psest_0085 - alpha-ketoglutarate TRAP transporter, solute receptor component (from data), at 87,238 to 88,191 _0085 Psest_0086: Psest_0086 - hypothetical protein, at 88,546 to 88,971 _0086 Psest_0087: Psest_0087 - hypothetical protein, at 89,043 to 89,285 _0087 Position (kb) 87 88 89Strain fitness (log2 ratio) -2 -1 0 1 2 3at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.580 kb on + strand, within Psest_0084at 86.580 kb on + strand, within Psest_0084at 86.581 kb on - strand, within Psest_0084at 86.581 kb on - strand, within Psest_0084at 86.581 kb on - strand, within Psest_0084at 86.581 kb on - strand, within Psest_0084at 86.595 kb on + strand, within Psest_0084at 86.618 kb on + strand, within Psest_0084at 86.643 kb on + strand, within Psest_0084at 86.643 kb on + strand, within Psest_0084at 86.643 kb on + strand, within Psest_0084at 86.644 kb on - strand, within Psest_0084at 86.644 kb on - strand, within Psest_0084at 86.644 kb on - strand, within Psest_0084at 86.644 kb on - strand, within Psest_0084at 86.646 kb on + strand, within Psest_0084at 86.646 kb on + strand, within Psest_0084at 86.676 kb on + strand, within Psest_0084at 86.677 kb on - strand, within Psest_0084at 86.841 kb on + strandat 86.841 kb on + strand, within Psest_0084at 86.841 kb on + strand, within Psest_0084at 86.841 kb on + strand, within Psest_0084at 86.841 kb on + strand, within Psest_0084at 86.842 kb on - strand, within Psest_0084at 86.842 kb on - strand, within Psest_0084at 86.842 kb on - strand, within Psest_0084at 87.021 kb on + strandat 87.022 kb on - strandat 87.045 kb on + strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.137 kb on + strandat 87.137 kb on + strandat 87.137 kb on + strandat 87.137 kb on + strandat 87.137 kb on + strandat 87.138 kb on - strandat 87.181 kb on + strandat 87.181 kb on + strandat 87.182 kb on - strandat 87.239 kb on + strandat 87.239 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.264 kb on - strandat 87.264 kb on - strandat 87.396 kb on - strand, within Psest_0085at 87.479 kb on + strand, within Psest_0085at 87.479 kb on + strand, within Psest_0085at 87.479 kb on + strand, within Psest_0085at 87.480 kb on - strand, within Psest_0085at 87.480 kb on - strand, within Psest_0085at 87.480 kb on - strand, within Psest_0085at 87.510 kb on - strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.702 kb on - strand, within Psest_0085at 87.702 kb on - strand, within Psest_0085at 87.702 kb on - strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.988 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.041 kb on - strand, within Psest_0085at 88.041 kb on - strand, within Psest_0085at 88.073 kb on + strand, within Psest_0085at 88.073 kb on + strand, within Psest_0085at 88.074 kb on - strand, within Psest_0085at 88.074 kb on - strand, within Psest_0085at 88.074 kb on - strand, within Psest_0085at 88.240 kb on - strandat 88.368 kb on + strandat 88.368 kb on + strandat 88.402 kb on - strandat 88.452 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.488 kb on + strandat 88.489 kb on - strandat 88.489 kb on - strandat 88.673 kb on - strand, within Psest_0086at 88.769 kb on - strand, within Psest_0086at 88.769 kb on - strand, within Psest_0086at 88.769 kb on - strand, within Psest_0086at 89.112 kb on + strand, within Psest_0087at 89.112 kb on + strand, within Psest_0087at 89.112 kb on + strand, within Psest_0087at 89.113 kb on - strand, within Psest_0087at 89.113 kb on - strand, within Psest_0087

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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86,565 + Psest_0084 0.73 -0.0
86,565 + Psest_0084 0.73 +0.1
86,565 + Psest_0084 0.73 -0.3
86,565 + Psest_0084 0.73 -0.4
86,565 + Psest_0084 0.73 +0.2
86,565 + Psest_0084 0.73 -1.1
86,565 + Psest_0084 0.73 -1.1
86,565 + Psest_0084 0.73 +0.4
86,565 + Psest_0084 0.73 +0.4
86,565 + Psest_0084 0.73 -1.3
86,565 + Psest_0084 0.73 -0.6
86,565 + Psest_0084 0.73 +0.3
86,566 - Psest_0084 0.73 -0.3
86,566 - Psest_0084 0.73 +0.4
86,566 - Psest_0084 0.73 -0.7
86,566 - Psest_0084 0.73 -0.1
86,566 - Psest_0084 0.73 -0.7
86,566 - Psest_0084 0.73 +0.7
86,566 - Psest_0084 0.73 +0.9
86,566 - Psest_0084 0.73 -0.8
86,566 - Psest_0084 0.73 +1.1
86,566 - Psest_0084 0.73 +0.1
86,566 - Psest_0084 0.73 +1.2
86,566 - Psest_0084 0.73 +0.1
86,566 - Psest_0084 0.73 -0.4
86,566 - Psest_0084 0.73 +0.0
86,566 - Psest_0084 0.73 -1.1
86,566 - Psest_0084 0.73 +0.0
86,580 + Psest_0084 0.74 +0.5
86,580 + Psest_0084 0.74 -0.2
86,581 - Psest_0084 0.74 -0.3
86,581 - Psest_0084 0.74 -0.4
86,581 - Psest_0084 0.74 +0.6
86,581 - Psest_0084 0.74 +0.5
86,595 + Psest_0084 0.75 -0.2
86,618 + Psest_0084 0.76 -0.5
86,643 + Psest_0084 0.77 +0.2
86,643 + Psest_0084 0.77 -0.8
86,643 + Psest_0084 0.77 -1.6
86,644 - Psest_0084 0.77 +0.5
86,644 - Psest_0084 0.77 -0.6
86,644 - Psest_0084 0.77 -2.0
86,644 - Psest_0084 0.77 -1.7
86,646 + Psest_0084 0.77 -1.4
86,646 + Psest_0084 0.77 +0.0
86,676 + Psest_0084 0.79 +0.3
86,677 - Psest_0084 0.79 -0.8
86,841 + -0.8
86,841 + Psest_0084 0.87 -0.6
86,841 + Psest_0084 0.87 -0.5
86,841 + Psest_0084 0.87 -0.1
86,841 + Psest_0084 0.87 -0.1
86,842 - Psest_0084 0.87 -0.1
86,842 - Psest_0084 0.87 +0.0
86,842 - Psest_0084 0.87 +0.1
87,021 + -0.2
87,022 - +0.6
87,045 + +0.5
87,046 - -1.7
87,046 - -0.1
87,046 - +0.7
87,046 - -0.7
87,046 - +2.9
87,046 - -0.5
87,046 - +0.2
87,046 - -0.6
87,046 - +0.2
87,137 + +1.7
87,137 + -2.0
87,137 + +0.2
87,137 + +0.7
87,137 + +0.1
87,138 - +0.2
87,181 + -0.3
87,181 + +0.3
87,182 - +0.6
87,239 + -0.4
87,239 + -0.3
87,263 + +0.5
87,263 + +0.2
87,263 + +0.6
87,263 + +0.1
87,263 + +0.2
87,263 + -0.4
87,263 + -0.4
87,263 + -0.7
87,264 - -0.2
87,264 - -0.2
87,396 - Psest_0085 0.17 +0.6
87,479 + Psest_0085 0.25 -0.8
87,479 + Psest_0085 0.25 -0.4
87,479 + Psest_0085 0.25 -1.6
87,480 - Psest_0085 0.25 +0.2
87,480 - Psest_0085 0.25 +2.7
87,480 - Psest_0085 0.25 -0.3
87,510 - Psest_0085 0.29 -1.7
87,668 + Psest_0085 0.45 -0.1
87,668 + Psest_0085 0.45 +0.9
87,668 + Psest_0085 0.45 -0.2
87,668 + Psest_0085 0.45 -1.3
87,701 + Psest_0085 0.49 -1.2
87,701 + Psest_0085 0.49 -0.2
87,701 + Psest_0085 0.49 -0.2
87,701 + Psest_0085 0.49 +0.3
87,702 - Psest_0085 0.49 -0.7
87,702 - Psest_0085 0.49 -0.2
87,702 - Psest_0085 0.49 -0.8
87,839 + Psest_0085 0.63 -1.4
87,839 + Psest_0085 0.63 -0.1
87,839 + Psest_0085 0.63 -0.4
87,839 + Psest_0085 0.63 -0.3
87,839 + Psest_0085 0.63 -0.3
87,839 + Psest_0085 0.63 +0.7
87,839 + Psest_0085 0.63 +0.5
87,840 - Psest_0085 0.63 -1.0
87,840 - Psest_0085 0.63 -0.2
87,840 - Psest_0085 0.63 +1.5
87,840 - Psest_0085 0.63 +0.8
87,840 - Psest_0085 0.63 +0.2
87,840 - Psest_0085 0.63 -0.5
87,848 + Psest_0085 0.64 -1.3
87,848 + Psest_0085 0.64 -0.3
87,848 + Psest_0085 0.64 +0.2
87,848 + Psest_0085 0.64 -0.3
87,848 + Psest_0085 0.64 -1.0
87,848 + Psest_0085 0.64 -0.4
87,849 - Psest_0085 0.64 +0.2
87,849 - Psest_0085 0.64 -1.6
87,849 - Psest_0085 0.64 -1.3
87,849 - Psest_0085 0.64 -0.2
87,849 - Psest_0085 0.64 -1.2
87,849 - Psest_0085 0.64 -0.4
87,849 - Psest_0085 0.64 +0.1
87,849 - Psest_0085 0.64 -0.6
87,849 - Psest_0085 0.64 -0.5
87,988 + Psest_0085 0.79 -1.2
88,040 + Psest_0085 0.84 -0.6
88,040 + Psest_0085 0.84 -0.6
88,040 + Psest_0085 0.84 -0.4
88,040 + Psest_0085 0.84 -0.6
88,040 + Psest_0085 0.84 -1.7
88,040 + Psest_0085 0.84 -0.2
88,041 - Psest_0085 0.84 -0.2
88,041 - Psest_0085 0.84 +0.0
88,073 + Psest_0085 0.88 -0.2
88,073 + Psest_0085 0.88 +0.2
88,074 - Psest_0085 0.88 -0.1
88,074 - Psest_0085 0.88 -0.1
88,074 - Psest_0085 0.88 -0.5
88,240 - +1.1
88,368 + +0.2
88,368 + +0.3
88,402 - +0.6
88,452 + +0.0
88,486 + +0.0
88,486 + +1.2
88,486 + -1.7
88,486 + -0.2
88,486 + +0.7
88,486 + +0.3
88,487 - +0.2
88,487 - +2.4
88,487 - +0.5
88,487 - +0.8
88,487 - +0.8
88,487 - +0.8
88,488 + -1.2
88,489 - +0.9
88,489 - -1.0
88,673 - Psest_0086 0.30 -0.5
88,769 - Psest_0086 0.52 +0.4
88,769 - Psest_0086 0.52 +0.6
88,769 - Psest_0086 0.52 -1.0
89,112 + Psest_0087 0.28 +1.2
89,112 + Psest_0087 0.28 +0.2
89,112 + Psest_0087 0.28 -0.4
89,113 - Psest_0087 0.29 -0.8
89,113 - Psest_0087 0.29 +0.8

Or see this region's nucleotide sequence