Strain Fitness in Marinobacter adhaerens HP15 around HP15_2713

Experiment: L-Leucine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2711 and HP15_2712 overlap by 22 nucleotidesHP15_2712 and HP15_2713 are separated by 29 nucleotidesHP15_2713 and HP15_2714 are separated by 54 nucleotidesHP15_2714 and HP15_2715 are separated by 76 nucleotides HP15_2711: HP15_2711 - conserved hypothetical protein, membrane, at 2,864,044 to 2,864,925 _2711 HP15_2712: HP15_2712 - conserved hypothetical protein, at 2,864,904 to 2,865,197 _2712 HP15_2713: HP15_2713 - permease, major facilitator superfamily MFS-1, at 2,865,227 to 2,866,386 _2713 HP15_2714: HP15_2714 - elongation factor P-like protein, at 2,866,441 to 2,867,007 _2714 HP15_2715: HP15_2715 - low specificity L-threonine aldolase, at 2,867,084 to 2,868,115 _2715 Position (kb) 2865 2866 2867Strain fitness (log2 ratio) -2 -1 0 1at 2864.339 kb on + strand, within HP15_2711at 2864.353 kb on + strand, within HP15_2711at 2864.368 kb on - strand, within HP15_2711at 2864.478 kb on + strand, within HP15_2711at 2864.741 kb on + strand, within HP15_2711at 2864.858 kb on + strandat 2864.866 kb on - strandat 2864.941 kb on + strand, within HP15_2712at 2864.948 kb on + strand, within HP15_2712at 2864.948 kb on + strand, within HP15_2712at 2864.958 kb on - strand, within HP15_2712at 2865.307 kb on + strandat 2865.496 kb on + strand, within HP15_2713at 2865.523 kb on - strand, within HP15_2713at 2865.567 kb on - strand, within HP15_2713at 2865.569 kb on + strand, within HP15_2713at 2865.641 kb on + strand, within HP15_2713at 2865.649 kb on - strand, within HP15_2713at 2865.658 kb on + strand, within HP15_2713at 2865.673 kb on + strand, within HP15_2713at 2865.678 kb on + strand, within HP15_2713at 2865.678 kb on + strand, within HP15_2713at 2865.773 kb on - strand, within HP15_2713at 2865.938 kb on + strand, within HP15_2713at 2865.938 kb on + strand, within HP15_2713at 2865.943 kb on + strand, within HP15_2713at 2865.948 kb on + strand, within HP15_2713at 2866.024 kb on + strand, within HP15_2713at 2866.079 kb on - strand, within HP15_2713at 2866.089 kb on - strand, within HP15_2713at 2866.112 kb on - strand, within HP15_2713at 2866.122 kb on + strand, within HP15_2713at 2866.122 kb on + strand, within HP15_2713at 2866.169 kb on + strand, within HP15_2713at 2866.192 kb on - strand, within HP15_2713at 2866.386 kb on + strandat 2866.386 kb on + strandat 2866.467 kb on + strandat 2866.475 kb on - strandat 2866.475 kb on - strandat 2866.555 kb on - strand, within HP15_2714at 2866.611 kb on + strand, within HP15_2714at 2866.728 kb on - strand, within HP15_2714at 2866.818 kb on + strand, within HP15_2714at 2866.836 kb on + strand, within HP15_2714at 2866.864 kb on + strand, within HP15_2714at 2866.920 kb on - strand, within HP15_2714at 2867.088 kb on - strandat 2867.166 kb on - strandat 2867.265 kb on - strand, within HP15_2715

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine as (N)
remove
2,864,339 + HP15_2711 0.33 +1.4
2,864,353 + HP15_2711 0.35 -0.0
2,864,368 - HP15_2711 0.37 -0.8
2,864,478 + HP15_2711 0.49 -0.0
2,864,741 + HP15_2711 0.79 +1.7
2,864,858 + -0.3
2,864,866 - +1.2
2,864,941 + HP15_2712 0.13 -1.7
2,864,948 + HP15_2712 0.15 -0.3
2,864,948 + HP15_2712 0.15 -0.6
2,864,958 - HP15_2712 0.18 -0.7
2,865,307 + +0.5
2,865,496 + HP15_2713 0.23 -1.7
2,865,523 - HP15_2713 0.26 -0.6
2,865,567 - HP15_2713 0.29 -0.9
2,865,569 + HP15_2713 0.29 +1.1
2,865,641 + HP15_2713 0.36 +0.0
2,865,649 - HP15_2713 0.36 -0.8
2,865,658 + HP15_2713 0.37 +0.7
2,865,673 + HP15_2713 0.38 -0.6
2,865,678 + HP15_2713 0.39 +1.2
2,865,678 + HP15_2713 0.39 -1.3
2,865,773 - HP15_2713 0.47 -0.5
2,865,938 + HP15_2713 0.61 -2.3
2,865,938 + HP15_2713 0.61 -0.8
2,865,943 + HP15_2713 0.62 -0.3
2,865,948 + HP15_2713 0.62 +0.3
2,866,024 + HP15_2713 0.69 +0.2
2,866,079 - HP15_2713 0.73 +1.2
2,866,089 - HP15_2713 0.74 -0.3
2,866,112 - HP15_2713 0.76 -0.3
2,866,122 + HP15_2713 0.77 +1.3
2,866,122 + HP15_2713 0.77 -2.0
2,866,169 + HP15_2713 0.81 -0.3
2,866,192 - HP15_2713 0.83 +0.3
2,866,386 + +0.1
2,866,386 + -0.4
2,866,467 + +1.5
2,866,475 - +1.4
2,866,475 - +0.1
2,866,555 - HP15_2714 0.20 -0.9
2,866,611 + HP15_2714 0.30 -2.0
2,866,728 - HP15_2714 0.51 +0.4
2,866,818 + HP15_2714 0.66 +0.8
2,866,836 + HP15_2714 0.70 -0.3
2,866,864 + HP15_2714 0.75 -0.9
2,866,920 - HP15_2714 0.84 +0.7
2,867,088 - +0.8
2,867,166 - -0.3
2,867,265 - HP15_2715 0.18 +0.0

Or see this region's nucleotide sequence