Strain Fitness in Marinobacter adhaerens HP15 around HP15_2302

Experiment: L-Leucine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2300 and HP15_2301 are separated by 11 nucleotidesHP15_2301 and HP15_2302 are separated by 162 nucleotidesHP15_2302 and HP15_2303 are separated by 31 nucleotidesHP15_2303 and HP15_2304 are separated by 92 nucleotides HP15_2300: HP15_2300 - chemotaxis phosphatase, CheZ, at 2,421,884 to 2,422,441 _2300 HP15_2301: HP15_2301 - response regulator receiver domain protein (CheY-), at 2,422,453 to 2,422,836 _2301 HP15_2302: HP15_2302 - flagellar biosynthesis sigma factor FliA, at 2,422,999 to 2,423,742 _2302 HP15_2303: HP15_2303 - flagellar synthesis regulator FleN, at 2,423,774 to 2,424,562 _2303 HP15_2304: HP15_2304 - flagellar biosynthesis regulator FlhF, at 2,424,655 to 2,425,962 _2304 Position (kb) 2422 2423 2424Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2422.041 kb on - strand, within HP15_2300at 2422.102 kb on + strand, within HP15_2300at 2422.110 kb on - strand, within HP15_2300at 2422.143 kb on + strand, within HP15_2300at 2422.312 kb on + strand, within HP15_2300at 2422.315 kb on - strand, within HP15_2300at 2422.357 kb on + strand, within HP15_2300at 2422.396 kb on + strandat 2422.404 kb on - strandat 2422.545 kb on - strand, within HP15_2301at 2422.565 kb on + strand, within HP15_2301at 2422.565 kb on + strand, within HP15_2301at 2422.628 kb on + strand, within HP15_2301at 2422.628 kb on + strand, within HP15_2301at 2422.628 kb on + strand, within HP15_2301at 2422.636 kb on - strand, within HP15_2301at 2422.636 kb on - strand, within HP15_2301at 2422.636 kb on - strand, within HP15_2301at 2422.987 kb on + strandat 2423.070 kb on + strandat 2423.070 kb on + strandat 2423.070 kb on + strandat 2423.078 kb on - strand, within HP15_2302at 2423.078 kb on - strand, within HP15_2302at 2423.078 kb on - strand, within HP15_2302at 2423.093 kb on - strand, within HP15_2302at 2423.119 kb on - strand, within HP15_2302at 2423.231 kb on + strand, within HP15_2302at 2423.346 kb on + strand, within HP15_2302at 2423.346 kb on + strand, within HP15_2302at 2423.346 kb on + strand, within HP15_2302at 2423.354 kb on - strand, within HP15_2302at 2423.370 kb on + strand, within HP15_2302at 2423.448 kb on + strand, within HP15_2302at 2423.463 kb on - strand, within HP15_2302at 2423.557 kb on - strand, within HP15_2302at 2423.564 kb on + strand, within HP15_2302at 2424.042 kb on + strand, within HP15_2303at 2424.109 kb on + strand, within HP15_2303at 2424.117 kb on - strand, within HP15_2303at 2424.290 kb on + strand, within HP15_2303at 2424.493 kb on + strandat 2424.625 kb on - strandat 2424.640 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine as (N)
remove
2,422,041 - HP15_2300 0.28 +1.0
2,422,102 + HP15_2300 0.39 +1.4
2,422,110 - HP15_2300 0.41 +1.1
2,422,143 + HP15_2300 0.46 +1.4
2,422,312 + HP15_2300 0.77 +0.7
2,422,315 - HP15_2300 0.77 +0.9
2,422,357 + HP15_2300 0.85 +0.9
2,422,396 + +1.7
2,422,404 - +0.7
2,422,545 - HP15_2301 0.24 +0.9
2,422,565 + HP15_2301 0.29 +1.9
2,422,565 + HP15_2301 0.29 +0.9
2,422,628 + HP15_2301 0.46 +1.4
2,422,628 + HP15_2301 0.46 +1.8
2,422,628 + HP15_2301 0.46 +0.4
2,422,636 - HP15_2301 0.48 +1.6
2,422,636 - HP15_2301 0.48 +1.3
2,422,636 - HP15_2301 0.48 +1.5
2,422,987 + +0.6
2,423,070 + +1.9
2,423,070 + +1.7
2,423,070 + +2.5
2,423,078 - HP15_2302 0.11 +1.9
2,423,078 - HP15_2302 0.11 +3.4
2,423,078 - HP15_2302 0.11 +2.0
2,423,093 - HP15_2302 0.13 +2.3
2,423,119 - HP15_2302 0.16 +1.6
2,423,231 + HP15_2302 0.31 +1.9
2,423,346 + HP15_2302 0.47 +1.5
2,423,346 + HP15_2302 0.47 +1.5
2,423,346 + HP15_2302 0.47 +0.9
2,423,354 - HP15_2302 0.48 +1.5
2,423,370 + HP15_2302 0.50 +1.9
2,423,448 + HP15_2302 0.60 +1.5
2,423,463 - HP15_2302 0.62 +1.1
2,423,557 - HP15_2302 0.75 +2.4
2,423,564 + HP15_2302 0.76 +1.5
2,424,042 + HP15_2303 0.34 -2.9
2,424,109 + HP15_2303 0.42 +0.1
2,424,117 - HP15_2303 0.43 -1.7
2,424,290 + HP15_2303 0.65 +0.6
2,424,493 + +1.0
2,424,625 - +1.0
2,424,640 - -0.0

Or see this region's nucleotide sequence