Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1986 and Psest_1987 overlap by 4 nucleotides Psest_1987 and Psest_1988 are separated by 191 nucleotides Psest_1988 and Psest_1989 are separated by 93 nucleotides Psest_1989 and Psest_1990 are separated by 74 nucleotides
Psest_1986: Psest_1986 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,102,568 to 2,104,811
_1986
Psest_1987: Psest_1987 - cytidylate kinase, at 2,104,808 to 2,105,497
_1987
Psest_1988: Psest_1988 - ribosomal protein S1, at 2,105,689 to 2,107,371
_1988
Psest_1989: Psest_1989 - Transcriptional regulators, at 2,107,465 to 2,107,908
_1989
Psest_1990: Psest_1990 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 2,107,983 to 2,109,155
_1990
Position (kb)
2105
2106
2107
2108 Strain fitness (log2 ratio)
-1
0
1
2 at 2107.555 kb on + strand, within Psest_1989 at 2107.624 kb on - strand, within Psest_1989 at 2107.624 kb on - strand, within Psest_1989 at 2107.624 kb on - strand, within Psest_1989 at 2107.624 kb on - strand, within Psest_1989 at 2107.629 kb on + strand, within Psest_1989 at 2107.630 kb on - strand, within Psest_1989 at 2107.650 kb on + strand, within Psest_1989 at 2107.651 kb on - strand, within Psest_1989 at 2107.724 kb on + strand, within Psest_1989 at 2107.724 kb on + strand, within Psest_1989 at 2107.728 kb on + strand, within Psest_1989 at 2107.728 kb on + strand, within Psest_1989 at 2107.729 kb on - strand, within Psest_1989 at 2107.729 kb on - strand, within Psest_1989 at 2107.871 kb on - strand at 2107.958 kb on + strand at 2108.152 kb on - strand, within Psest_1990 at 2108.331 kb on + strand, within Psest_1990
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 2,107,555 + Psest_1989 0.20 +1.6 2,107,624 - Psest_1989 0.36 +1.9 2,107,624 - Psest_1989 0.36 +1.7 2,107,624 - Psest_1989 0.36 +1.8 2,107,624 - Psest_1989 0.36 +1.4 2,107,629 + Psest_1989 0.37 +1.1 2,107,630 - Psest_1989 0.37 +1.3 2,107,650 + Psest_1989 0.42 +2.0 2,107,651 - Psest_1989 0.42 +1.3 2,107,724 + Psest_1989 0.58 +1.2 2,107,724 + Psest_1989 0.58 +2.4 2,107,728 + Psest_1989 0.59 +1.9 2,107,728 + Psest_1989 0.59 +1.0 2,107,729 - Psest_1989 0.59 +1.5 2,107,729 - Psest_1989 0.59 +1.4 2,107,871 - +0.2 2,107,958 + +1.7 2,108,152 - Psest_1990 0.14 -0.4 2,108,331 + Psest_1990 0.30 +0.2
Or see this region's nucleotide sequence