Experiment: L-Leucine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1091 and HP15_1092 are separated by 117 nucleotides HP15_1092 and HP15_1093 are separated by 20 nucleotides HP15_1093 and HP15_1094 are separated by 207 nucleotides
HP15_1091: HP15_1091 - conserved hypothetical protein, at 1,117,638 to 1,118,546
_1091
HP15_1092: HP15_1092 - transposase IS3/IS911 family protein, at 1,118,664 to 1,118,930
_1092
HP15_1093: HP15_1093 - integrase catalytic subunit, at 1,118,951 to 1,119,671
_1093
HP15_1094: HP15_1094 - benzoate membrane transport protein, at 1,119,879 to 1,121,111
_1094
Position (kb) 1118
1119 Strain fitness (log2 ratio) -1
0
1
2 at 1117.668 kb on + strand at 1117.742 kb on + strand, within HP15_1091 at 1117.867 kb on - strand, within HP15_1091 at 1117.880 kb on - strand, within HP15_1091 at 1117.907 kb on - strand, within HP15_1091 at 1117.975 kb on - strand, within HP15_1091 at 1117.975 kb on - strand, within HP15_1091 at 1117.979 kb on - strand, within HP15_1091 at 1117.995 kb on + strand, within HP15_1091 at 1117.996 kb on + strand, within HP15_1091 at 1118.020 kb on + strand, within HP15_1091 at 1118.030 kb on + strand, within HP15_1091 at 1118.038 kb on - strand, within HP15_1091 at 1118.125 kb on + strand, within HP15_1091 at 1118.159 kb on + strand, within HP15_1091 at 1118.161 kb on + strand, within HP15_1091 at 1118.212 kb on + strand, within HP15_1091 at 1118.217 kb on + strand, within HP15_1091 at 1118.217 kb on + strand, within HP15_1091 at 1118.225 kb on - strand, within HP15_1091 at 1118.267 kb on + strand, within HP15_1091 at 1118.337 kb on + strand, within HP15_1091 at 1118.346 kb on + strand, within HP15_1091 at 1118.354 kb on - strand, within HP15_1091 at 1118.402 kb on + strand, within HP15_1091 at 1118.711 kb on - strand, within HP15_1092 at 1118.743 kb on - strand, within HP15_1092 at 1118.811 kb on - strand, within HP15_1092 at 1118.890 kb on + strand, within HP15_1092 at 1119.008 kb on - strand at 1119.040 kb on + strand, within HP15_1093 at 1119.195 kb on + strand, within HP15_1093 at 1119.221 kb on - strand, within HP15_1093 at 1119.238 kb on - strand, within HP15_1093 at 1119.254 kb on + strand, within HP15_1093 at 1119.371 kb on + strand, within HP15_1093 at 1119.371 kb on + strand, within HP15_1093 at 1119.371 kb on + strand, within HP15_1093 at 1119.441 kb on - strand, within HP15_1093 at 1119.467 kb on - strand, within HP15_1093 at 1119.491 kb on + strand, within HP15_1093 at 1119.509 kb on - strand, within HP15_1093 at 1119.524 kb on + strand, within HP15_1093 at 1119.586 kb on - strand, within HP15_1093 at 1119.627 kb on - strand at 1119.711 kb on - strand at 1119.720 kb on + strand at 1119.840 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine as (N) remove 1,117,668 + +0.1 1,117,742 + HP15_1091 0.11 +0.2 1,117,867 - HP15_1091 0.25 -0.4 1,117,880 - HP15_1091 0.27 +2.3 1,117,907 - HP15_1091 0.30 -0.1 1,117,975 - HP15_1091 0.37 +1.1 1,117,975 - HP15_1091 0.37 +0.5 1,117,979 - HP15_1091 0.38 -1.0 1,117,995 + HP15_1091 0.39 -0.4 1,117,996 + HP15_1091 0.39 -0.4 1,118,020 + HP15_1091 0.42 +1.0 1,118,030 + HP15_1091 0.43 -0.2 1,118,038 - HP15_1091 0.44 +1.2 1,118,125 + HP15_1091 0.54 +0.2 1,118,159 + HP15_1091 0.57 -0.2 1,118,161 + HP15_1091 0.58 +0.3 1,118,212 + HP15_1091 0.63 -0.6 1,118,217 + HP15_1091 0.64 +1.9 1,118,217 + HP15_1091 0.64 +1.3 1,118,225 - HP15_1091 0.65 +0.7 1,118,267 + HP15_1091 0.69 -0.6 1,118,337 + HP15_1091 0.77 -0.3 1,118,346 + HP15_1091 0.78 +1.6 1,118,354 - HP15_1091 0.79 -0.0 1,118,402 + HP15_1091 0.84 -1.1 1,118,711 - HP15_1092 0.18 +0.2 1,118,743 - HP15_1092 0.30 +0.1 1,118,811 - HP15_1092 0.55 +0.8 1,118,890 + HP15_1092 0.85 +1.5 1,119,008 - +0.2 1,119,040 + HP15_1093 0.12 +1.2 1,119,195 + HP15_1093 0.34 -0.9 1,119,221 - HP15_1093 0.37 +1.1 1,119,238 - HP15_1093 0.40 +0.1 1,119,254 + HP15_1093 0.42 +0.8 1,119,371 + HP15_1093 0.58 +1.1 1,119,371 + HP15_1093 0.58 -0.3 1,119,371 + HP15_1093 0.58 +0.2 1,119,441 - HP15_1093 0.68 -0.6 1,119,467 - HP15_1093 0.72 +1.3 1,119,491 + HP15_1093 0.75 +0.4 1,119,509 - HP15_1093 0.77 +1.1 1,119,524 + HP15_1093 0.79 +0.5 1,119,586 - HP15_1093 0.88 -0.5 1,119,627 - +0.1 1,119,711 - +1.6 1,119,720 + +1.4 1,119,840 - +0.6
Or see this region's nucleotide sequence