Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2536

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2534 and DvMF_2535 are separated by 113 nucleotidesDvMF_2535 and DvMF_2536 are separated by 27 nucleotidesDvMF_2536 and DvMF_2537 are separated by 10 nucleotides DvMF_2534: DvMF_2534 - formate dehydrogenase beta subunit (RefSeq), at 3,199,714 to 3,200,466 _2534 DvMF_2535: DvMF_2535 - Methyltransferase type 11 (RefSeq), at 3,200,580 to 3,201,257 _2535 DvMF_2536: DvMF_2536 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,201,285 to 3,202,718 _2536 DvMF_2537: DvMF_2537 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 3,202,729 to 3,206,397 _2537 Position (kb) 3201 3202 3203Strain fitness (log2 ratio) -1 0 1at 3200.340 kb on - strand, within DvMF_2534at 3200.461 kb on + strandat 3200.461 kb on + strandat 3200.461 kb on + strandat 3200.469 kb on - strandat 3200.469 kb on - strandat 3200.498 kb on - strandat 3200.577 kb on + strandat 3200.818 kb on + strand, within DvMF_2535at 3200.818 kb on + strand, within DvMF_2535at 3200.826 kb on - strand, within DvMF_2535at 3201.142 kb on - strand, within DvMF_2535at 3201.215 kb on + strandat 3201.223 kb on - strandat 3201.339 kb on + strandat 3201.722 kb on - strand, within DvMF_2536at 3202.132 kb on - strand, within DvMF_2536at 3202.134 kb on + strand, within DvMF_2536at 3202.142 kb on - strand, within DvMF_2536at 3202.142 kb on - strand, within DvMF_2536at 3202.299 kb on + strand, within DvMF_2536at 3202.312 kb on + strand, within DvMF_2536at 3202.329 kb on + strand, within DvMF_2536at 3202.540 kb on - strand, within DvMF_2536at 3202.805 kb on - strandat 3202.910 kb on - strandat 3202.993 kb on + strandat 3203.046 kb on + strandat 3203.269 kb on - strand, within DvMF_2537at 3203.285 kb on - strand, within DvMF_2537at 3203.363 kb on - strand, within DvMF_2537at 3203.400 kb on + strand, within DvMF_2537at 3203.617 kb on - strand, within DvMF_2537at 3203.652 kb on - strand, within DvMF_2537

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,200,340 - DvMF_2534 0.83 -0.5
3,200,461 + -0.3
3,200,461 + -0.3
3,200,461 + +0.1
3,200,469 - +0.2
3,200,469 - -0.1
3,200,498 - -0.1
3,200,577 + -0.6
3,200,818 + DvMF_2535 0.35 -0.3
3,200,818 + DvMF_2535 0.35 -0.2
3,200,826 - DvMF_2535 0.36 -0.3
3,201,142 - DvMF_2535 0.83 +0.2
3,201,215 + -0.4
3,201,223 - -0.6
3,201,339 + -0.6
3,201,722 - DvMF_2536 0.30 -0.1
3,202,132 - DvMF_2536 0.59 -0.4
3,202,134 + DvMF_2536 0.59 -0.2
3,202,142 - DvMF_2536 0.60 -0.2
3,202,142 - DvMF_2536 0.60 -0.5
3,202,299 + DvMF_2536 0.71 +0.2
3,202,312 + DvMF_2536 0.72 -0.3
3,202,329 + DvMF_2536 0.73 -0.2
3,202,540 - DvMF_2536 0.88 -0.1
3,202,805 - -0.4
3,202,910 - -0.3
3,202,993 + -0.4
3,203,046 + -0.7
3,203,269 - DvMF_2537 0.15 -0.3
3,203,285 - DvMF_2537 0.15 -0.1
3,203,363 - DvMF_2537 0.17 -0.6
3,203,400 + DvMF_2537 0.18 -0.2
3,203,617 - DvMF_2537 0.24 -0.4
3,203,652 - DvMF_2537 0.25 -0.4

Or see this region's nucleotide sequence