Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2374

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2373 and DvMF_2374 overlap by 8 nucleotidesDvMF_2374 and DvMF_2375 are separated by 199 nucleotidesDvMF_2375 and DvMF_2376 are separated by 4 nucleotides DvMF_2373: DvMF_2373 - multi-sensor hybrid histidine kinase (RefSeq), at 2,994,337 to 2,998,836 _2373 DvMF_2374: DvMF_2374 - oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 2,998,829 to 3,000,175 _2374 DvMF_2375: DvMF_2375 - protein of unknown function DUF208 (RefSeq), at 3,000,375 to 3,001,025 _2375 DvMF_2376: DvMF_2376 - ribonuclease, Rne/Rng family (RefSeq), at 3,001,030 to 3,002,505 _2376 Position (kb) 2998 2999 3000 3001Strain fitness (log2 ratio) -1 0 1at 2997.938 kb on - strand, within DvMF_2373at 2997.986 kb on + strand, within DvMF_2373at 2998.109 kb on - strand, within DvMF_2373at 2998.195 kb on + strand, within DvMF_2373at 2998.429 kb on - strandat 2998.528 kb on - strandat 2998.667 kb on - strandat 2998.788 kb on + strandat 2998.850 kb on + strandat 2999.096 kb on + strand, within DvMF_2374at 2999.205 kb on + strand, within DvMF_2374at 2999.207 kb on - strand, within DvMF_2374at 2999.213 kb on - strand, within DvMF_2374at 2999.593 kb on + strand, within DvMF_2374at 2999.599 kb on + strand, within DvMF_2374at 2999.680 kb on + strand, within DvMF_2374at 2999.699 kb on - strand, within DvMF_2374at 2999.699 kb on - strand, within DvMF_2374at 2999.863 kb on + strand, within DvMF_2374at 2999.956 kb on - strand, within DvMF_2374at 2999.987 kb on + strand, within DvMF_2374at 3000.689 kb on + strand, within DvMF_2375at 3000.702 kb on - strand, within DvMF_2375at 3000.872 kb on + strand, within DvMF_2375at 3000.913 kb on + strand, within DvMF_2375

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,997,938 - DvMF_2373 0.80 -0.2
2,997,986 + DvMF_2373 0.81 -0.2
2,998,109 - DvMF_2373 0.84 -0.3
2,998,195 + DvMF_2373 0.86 -0.4
2,998,429 - +0.1
2,998,528 - +0.2
2,998,667 - +0.1
2,998,788 + -0.1
2,998,850 + -0.2
2,999,096 + DvMF_2374 0.20 -0.3
2,999,205 + DvMF_2374 0.28 -0.2
2,999,207 - DvMF_2374 0.28 +0.1
2,999,213 - DvMF_2374 0.29 +0.1
2,999,593 + DvMF_2374 0.57 -0.1
2,999,599 + DvMF_2374 0.57 -0.2
2,999,680 + DvMF_2374 0.63 -0.2
2,999,699 - DvMF_2374 0.65 +0.2
2,999,699 - DvMF_2374 0.65 +0.4
2,999,863 + DvMF_2374 0.77 -0.7
2,999,956 - DvMF_2374 0.84 -0.1
2,999,987 + DvMF_2374 0.86 -0.7
3,000,689 + DvMF_2375 0.48 +0.2
3,000,702 - DvMF_2375 0.50 -0.3
3,000,872 + DvMF_2375 0.76 -0.4
3,000,913 + DvMF_2375 0.83 +0.3

Or see this region's nucleotide sequence