Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2169

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2168 and DvMF_2169 are separated by 446 nucleotidesDvMF_2169 and DvMF_2170 are separated by 330 nucleotides DvMF_2168: DvMF_2168 - transcriptional regulator, TraR/DksA family (RefSeq), at 2,704,320 to 2,704,748 _2168 DvMF_2169: DvMF_2169 - phospholipid/glycerol acyltransferase (RefSeq), at 2,705,195 to 2,707,183 _2169 DvMF_2170: DvMF_2170 - protein of unknown function DUF523 (RefSeq), at 2,707,514 to 2,707,936 _2170 Position (kb) 2705 2706 2707 2708Strain fitness (log2 ratio) -2 -1 0 1 2at 2704.356 kb on - strandat 2704.400 kb on + strand, within DvMF_2168at 2704.428 kb on + strand, within DvMF_2168at 2704.433 kb on + strand, within DvMF_2168at 2704.433 kb on + strand, within DvMF_2168at 2704.530 kb on + strand, within DvMF_2168at 2704.546 kb on - strand, within DvMF_2168at 2704.750 kb on + strandat 2705.237 kb on - strandat 2705.381 kb on + strandat 2705.389 kb on - strandat 2705.522 kb on - strand, within DvMF_2169at 2705.533 kb on - strand, within DvMF_2169at 2705.744 kb on + strand, within DvMF_2169at 2705.796 kb on - strand, within DvMF_2169at 2705.951 kb on - strand, within DvMF_2169at 2706.017 kb on - strand, within DvMF_2169at 2706.038 kb on - strand, within DvMF_2169at 2706.091 kb on - strand, within DvMF_2169at 2706.367 kb on - strand, within DvMF_2169at 2706.461 kb on - strand, within DvMF_2169at 2706.491 kb on - strand, within DvMF_2169at 2706.499 kb on - strand, within DvMF_2169at 2706.504 kb on - strand, within DvMF_2169at 2706.519 kb on - strand, within DvMF_2169at 2706.564 kb on + strand, within DvMF_2169at 2706.582 kb on - strand, within DvMF_2169at 2706.701 kb on + strand, within DvMF_2169at 2706.709 kb on - strand, within DvMF_2169at 2706.709 kb on - strand, within DvMF_2169at 2706.785 kb on + strand, within DvMF_2169at 2706.972 kb on + strand, within DvMF_2169at 2707.064 kb on - strandat 2707.259 kb on - strandat 2707.259 kb on - strandat 2707.259 kb on - strandat 2707.379 kb on - strandat 2707.482 kb on + strandat 2707.611 kb on + strand, within DvMF_2170at 2707.699 kb on - strand, within DvMF_2170at 2708.038 kb on - strandat 2708.183 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,704,356 - -0.3
2,704,400 + DvMF_2168 0.19 -0.7
2,704,428 + DvMF_2168 0.25 +0.4
2,704,433 + DvMF_2168 0.26 -0.4
2,704,433 + DvMF_2168 0.26 -0.8
2,704,530 + DvMF_2168 0.49 +0.0
2,704,546 - DvMF_2168 0.53 -2.7
2,704,750 + -0.5
2,705,237 - +0.4
2,705,381 + +0.3
2,705,389 - -0.0
2,705,522 - DvMF_2169 0.16 +0.2
2,705,533 - DvMF_2169 0.17 -0.5
2,705,744 + DvMF_2169 0.28 -0.3
2,705,796 - DvMF_2169 0.30 +0.0
2,705,951 - DvMF_2169 0.38 -0.4
2,706,017 - DvMF_2169 0.41 -0.3
2,706,038 - DvMF_2169 0.42 +0.3
2,706,091 - DvMF_2169 0.45 -0.7
2,706,367 - DvMF_2169 0.59 -0.3
2,706,461 - DvMF_2169 0.64 +2.1
2,706,491 - DvMF_2169 0.65 -0.6
2,706,499 - DvMF_2169 0.66 -0.1
2,706,504 - DvMF_2169 0.66 -0.6
2,706,519 - DvMF_2169 0.67 +0.2
2,706,564 + DvMF_2169 0.69 -0.1
2,706,582 - DvMF_2169 0.70 -0.2
2,706,701 + DvMF_2169 0.76 -1.0
2,706,709 - DvMF_2169 0.76 -0.1
2,706,709 - DvMF_2169 0.76 -0.4
2,706,785 + DvMF_2169 0.80 -0.4
2,706,972 + DvMF_2169 0.89 -0.2
2,707,064 - -0.1
2,707,259 - -0.6
2,707,259 - +0.1
2,707,259 - -0.4
2,707,379 - -0.0
2,707,482 + -0.1
2,707,611 + DvMF_2170 0.23 -0.2
2,707,699 - DvMF_2170 0.44 -0.2
2,708,038 - +0.3
2,708,183 - -0.3

Or see this region's nucleotide sequence