Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2740

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2738 and Shewana3_2739 are separated by 252 nucleotidesShewana3_2739 and Shewana3_2740 are separated by 125 nucleotidesShewana3_2740 and Shewana3_2741 are separated by 303 nucleotides Shewana3_2738: Shewana3_2738 - hypothetical protein (RefSeq), at 3,269,967 to 3,270,791 _2738 Shewana3_2739: Shewana3_2739 - hypothetical protein (RefSeq), at 3,271,044 to 3,271,616 _2739 Shewana3_2740: Shewana3_2740 - hypothetical protein (RefSeq), at 3,271,742 to 3,272,140 _2740 Shewana3_2741: Shewana3_2741 - hypothetical protein (RefSeq), at 3,272,444 to 3,273,046 _2741 Position (kb) 3271 3272 3273Strain fitness (log2 ratio) -1 0 1at 3270.865 kb on + strandat 3271.310 kb on + strand, within Shewana3_2739at 3271.318 kb on - strand, within Shewana3_2739at 3271.318 kb on - strand, within Shewana3_2739at 3271.441 kb on - strand, within Shewana3_2739at 3271.629 kb on - strandat 3271.638 kb on - strandat 3271.667 kb on + strandat 3271.667 kb on + strandat 3272.305 kb on + strandat 3272.332 kb on + strandat 3272.369 kb on - strandat 3272.411 kb on - strandat 3272.444 kb on + strandat 3272.452 kb on - strandat 3272.543 kb on + strand, within Shewana3_2741at 3272.551 kb on - strand, within Shewana3_2741at 3272.931 kb on - strand, within Shewana3_2741at 3272.968 kb on + strand, within Shewana3_2741

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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3,270,865 + +0.4
3,271,310 + Shewana3_2739 0.46 +0.8
3,271,318 - Shewana3_2739 0.48 +0.6
3,271,318 - Shewana3_2739 0.48 +0.3
3,271,441 - Shewana3_2739 0.69 -0.4
3,271,629 - +0.1
3,271,638 - +0.2
3,271,667 + +0.8
3,271,667 + -0.0
3,272,305 + +0.6
3,272,332 + +1.3
3,272,369 - +0.1
3,272,411 - +1.0
3,272,444 + +0.5
3,272,452 - +0.4
3,272,543 + Shewana3_2741 0.16 +0.5
3,272,551 - Shewana3_2741 0.18 +0.7
3,272,931 - Shewana3_2741 0.81 +0.4
3,272,968 + Shewana3_2741 0.87 +0.1

Or see this region's nucleotide sequence