Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2117

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2116 and Shewana3_2117 are separated by 77 nucleotidesShewana3_2117 and Shewana3_2118 are separated by 59 nucleotidesShewana3_2118 and Shewana3_2119 overlap by 8 nucleotides Shewana3_2116: Shewana3_2116 - universal stress protein UspE (RefSeq), at 2,539,697 to 2,540,629 _2116 Shewana3_2117: Shewana3_2117 - PP-loop domain-containing protein (RefSeq), at 2,540,707 to 2,541,675 _2117 Shewana3_2118: Shewana3_2118 - hypothetical protein (RefSeq), at 2,541,735 to 2,542,358 _2118 Shewana3_2119: Shewana3_2119 - mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (RefSeq), at 2,542,351 to 2,543,163 _2119 Position (kb) 2540 2541 2542Strain fitness (log2 ratio) -1 0 1at 2540.386 kb on - strand, within Shewana3_2116at 2541.020 kb on + strand, within Shewana3_2117at 2541.429 kb on + strand, within Shewana3_2117at 2541.749 kb on + strandat 2541.823 kb on - strand, within Shewana3_2118at 2541.856 kb on - strand, within Shewana3_2118at 2541.876 kb on - strand, within Shewana3_2118at 2542.008 kb on + strand, within Shewana3_2118at 2542.053 kb on - strand, within Shewana3_2118at 2542.568 kb on - strand, within Shewana3_2119at 2542.601 kb on + strand, within Shewana3_2119

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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2,540,386 - Shewana3_2116 0.74 -1.5
2,541,020 + Shewana3_2117 0.32 +1.5
2,541,429 + Shewana3_2117 0.75 +0.9
2,541,749 + -0.6
2,541,823 - Shewana3_2118 0.14 +0.6
2,541,856 - Shewana3_2118 0.19 -0.4
2,541,876 - Shewana3_2118 0.23 +0.6
2,542,008 + Shewana3_2118 0.44 +0.5
2,542,053 - Shewana3_2118 0.51 +0.7
2,542,568 - Shewana3_2119 0.27 -1.1
2,542,601 + Shewana3_2119 0.31 -1.1

Or see this region's nucleotide sequence