Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2050 and Shewana3_2051 are separated by 69 nucleotides Shewana3_2051 and Shewana3_2052 are separated by 8 nucleotides Shewana3_2052 and Shewana3_2053 overlap by 8 nucleotides Shewana3_2053 and Shewana3_2054 are separated by 18 nucleotides
Shewana3_2050: Shewana3_2050 - DNA translocase FtsK (RefSeq), at 2,457,918 to 2,460,671
_2050
Shewana3_2051: Shewana3_2051 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 2,460,741 to 2,461,361
_2051
Shewana3_2052: Shewana3_2052 - recombination factor protein RarA (RefSeq), at 2,461,370 to 2,462,701
_2052
Shewana3_2053: Shewana3_2053 - camphor resistance protein CrcB (RefSeq), at 2,462,694 to 2,463,068
_2053
Shewana3_2054: Shewana3_2054 - seryl-tRNA synthetase (RefSeq), at 2,463,087 to 2,464,373
_2054
Position (kb)
2461
2462
2463 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2461.455 kb on - strand at 2461.496 kb on + strand at 2461.736 kb on - strand, within Shewana3_2052 at 2461.975 kb on + strand, within Shewana3_2052 at 2461.975 kb on + strand, within Shewana3_2052 at 2462.001 kb on + strand, within Shewana3_2052 at 2462.033 kb on - strand, within Shewana3_2052 at 2462.307 kb on - strand, within Shewana3_2052 at 2462.584 kb on + strand at 2462.795 kb on + strand, within Shewana3_2053
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,461,455 - +0.8 2,461,496 + +1.2 2,461,736 - Shewana3_2052 0.27 -1.0 2,461,975 + Shewana3_2052 0.45 -2.0 2,461,975 + Shewana3_2052 0.45 +0.8 2,462,001 + Shewana3_2052 0.47 +0.7 2,462,033 - Shewana3_2052 0.50 -0.1 2,462,307 - Shewana3_2052 0.70 +2.4 2,462,584 + +0.0 2,462,795 + Shewana3_2053 0.27 +1.8
Or see this region's nucleotide sequence