Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1843

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1840 and Shewana3_1842 are separated by 198 nucleotidesShewana3_1842 and Shewana3_1843 are separated by 152 nucleotidesShewana3_1843 and Shewana3_1844 are separated by 24 nucleotidesShewana3_1844 and Shewana3_1845 are separated by 13 nucleotides Shewana3_1840: Shewana3_1840 - no description, at 2,182,087 to 2,182,728 _1840 Shewana3_1842: Shewana3_1842 - hypothetical protein (RefSeq), at 2,182,927 to 2,183,268 _1842 Shewana3_1843: Shewana3_1843 - hypothetical protein (RefSeq), at 2,183,421 to 2,183,771 _1843 Shewana3_1844: Shewana3_1844 - hypothetical protein (RefSeq), at 2,183,796 to 2,183,996 _1844 Shewana3_1845: Shewana3_1845 - hypothetical protein (RefSeq), at 2,184,010 to 2,187,216 _1845 Position (kb) 2183 2184Strain fitness (log2 ratio) -1 0 1at 2182.564 kb on + strand, within Shewana3_1840at 2182.572 kb on - strand, within Shewana3_1840at 2182.767 kb on - strandat 2183.188 kb on - strand, within Shewana3_1842at 2183.197 kb on + strand, within Shewana3_1842at 2183.253 kb on + strandat 2183.598 kb on - strand, within Shewana3_1843at 2184.517 kb on + strand, within Shewana3_1845at 2184.524 kb on + strand, within Shewana3_1845at 2184.567 kb on - strand, within Shewana3_1845at 2184.672 kb on + strand, within Shewana3_1845at 2184.763 kb on + strand, within Shewana3_1845

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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2,182,564 + Shewana3_1840 0.74 +0.3
2,182,572 - Shewana3_1840 0.76 +0.8
2,182,767 - -0.3
2,183,188 - Shewana3_1842 0.76 -0.0
2,183,197 + Shewana3_1842 0.79 -1.7
2,183,253 + +0.7
2,183,598 - Shewana3_1843 0.50 +0.4
2,184,517 + Shewana3_1845 0.16 +0.7
2,184,524 + Shewana3_1845 0.16 -0.3
2,184,567 - Shewana3_1845 0.17 +0.0
2,184,672 + Shewana3_1845 0.21 +0.8
2,184,763 + Shewana3_1845 0.23 -0.7

Or see this region's nucleotide sequence