Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0839 and Shewana3_0840 are separated by 229 nucleotides Shewana3_0840 and Shewana3_0841 are separated by 3 nucleotides
Shewana3_0839: Shewana3_0839 - AFG1 family ATPase (RefSeq), at 971,433 to 972,635
_0839
Shewana3_0840: Shewana3_0840 - hypothetical protein (RefSeq), at 972,865 to 973,701
_0840
Shewana3_0841: Shewana3_0841 - peptidase M16 domain-containing protein (RefSeq), at 973,705 to 975,243
_0841
Position (kb) 972
973
974 Strain fitness (log2 ratio) -1
0
1 at 971.971 kb on - strand, within Shewana3_0839 at 972.070 kb on + strand, within Shewana3_0839 at 972.070 kb on + strand, within Shewana3_0839 at 972.078 kb on - strand, within Shewana3_0839 at 972.078 kb on - strand, within Shewana3_0839 at 972.295 kb on + strand, within Shewana3_0839 at 972.318 kb on + strand, within Shewana3_0839 at 972.500 kb on + strand, within Shewana3_0839 at 972.699 kb on + strand at 972.699 kb on + strand at 972.707 kb on - strand at 972.707 kb on - strand at 972.854 kb on + strand at 972.862 kb on - strand at 972.998 kb on - strand, within Shewana3_0840 at 973.014 kb on + strand, within Shewana3_0840 at 973.015 kb on + strand, within Shewana3_0840 at 973.258 kb on + strand, within Shewana3_0840 at 973.263 kb on + strand, within Shewana3_0840 at 973.263 kb on + strand, within Shewana3_0840 at 973.388 kb on + strand, within Shewana3_0840 at 973.435 kb on + strand, within Shewana3_0840 at 973.443 kb on - strand, within Shewana3_0840 at 973.499 kb on - strand, within Shewana3_0840 at 973.499 kb on - strand, within Shewana3_0840 at 973.499 kb on - strand, within Shewana3_0840 at 973.832 kb on - strand at 973.855 kb on + strand at 973.938 kb on + strand, within Shewana3_0841 at 973.990 kb on - strand, within Shewana3_0841 at 974.055 kb on + strand, within Shewana3_0841 at 974.098 kb on - strand, within Shewana3_0841 at 974.250 kb on - strand, within Shewana3_0841 at 974.406 kb on - strand, within Shewana3_0841 at 974.424 kb on + strand, within Shewana3_0841 at 974.439 kb on - strand, within Shewana3_0841 at 974.503 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.556 kb on - strand, within Shewana3_0841 at 974.577 kb on + strand, within Shewana3_0841 at 974.594 kb on + strand, within Shewana3_0841 at 974.618 kb on + strand, within Shewana3_0841
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 971,971 - Shewana3_0839 0.45 -0.1 972,070 + Shewana3_0839 0.53 -1.5 972,070 + Shewana3_0839 0.53 +0.0 972,078 - Shewana3_0839 0.54 -1.6 972,078 - Shewana3_0839 0.54 +0.9 972,295 + Shewana3_0839 0.72 +0.3 972,318 + Shewana3_0839 0.74 -0.8 972,500 + Shewana3_0839 0.89 -1.1 972,699 + -0.2 972,699 + -0.1 972,707 - +0.2 972,707 - +0.1 972,854 + -0.1 972,862 - +1.1 972,998 - Shewana3_0840 0.16 +0.5 973,014 + Shewana3_0840 0.18 -0.9 973,015 + Shewana3_0840 0.18 +0.4 973,258 + Shewana3_0840 0.47 -0.9 973,263 + Shewana3_0840 0.48 -0.1 973,263 + Shewana3_0840 0.48 +0.0 973,388 + Shewana3_0840 0.62 +0.2 973,435 + Shewana3_0840 0.68 -1.0 973,443 - Shewana3_0840 0.69 -0.1 973,499 - Shewana3_0840 0.76 -0.2 973,499 - Shewana3_0840 0.76 +0.3 973,499 - Shewana3_0840 0.76 +0.1 973,832 - +0.7 973,855 + +0.3 973,938 + Shewana3_0841 0.15 +0.1 973,990 - Shewana3_0841 0.19 +0.6 974,055 + Shewana3_0841 0.23 -1.2 974,098 - Shewana3_0841 0.26 -1.2 974,250 - Shewana3_0841 0.35 +0.6 974,406 - Shewana3_0841 0.46 -1.3 974,424 + Shewana3_0841 0.47 +0.7 974,439 - Shewana3_0841 0.48 +0.4 974,503 - Shewana3_0841 0.52 +0.2 974,556 - Shewana3_0841 0.55 +0.1 974,556 - Shewana3_0841 0.55 +0.5 974,556 - Shewana3_0841 0.55 +0.2 974,556 - Shewana3_0841 0.55 +0.5 974,577 + Shewana3_0841 0.57 -0.1 974,594 + Shewana3_0841 0.58 -1.1 974,618 + Shewana3_0841 0.59 +0.4
Or see this region's nucleotide sequence