Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0750 and Shewana3_0751 are separated by 266 nucleotides Shewana3_0751 and Shewana3_0752 are separated by 144 nucleotides Shewana3_0752 and Shewana3_0753 are separated by 83 nucleotides Shewana3_0753 and Shewana3_0754 are separated by 199 nucleotides
Shewana3_0750: Shewana3_0750 - malate dehydrogenase (RefSeq), at 869,557 to 871,245
_0750
Shewana3_0751: Shewana3_0751 - hypothetical protein (RefSeq), at 871,512 to 871,982
_0751
Shewana3_0752: Shewana3_0752 - putative manganese transporter (RefSeq), at 872,127 to 873,413
_0752
Shewana3_0753: Shewana3_0753 - membrane-flanked domain-containing protein (RefSeq), at 873,497 to 874,039
_0753
Shewana3_0754: Shewana3_0754 - TonB-dependent receptor (RefSeq), at 874,239 to 876,824
_0754
Position (kb) 872
873
874 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 871.226 kb on - strand at 871.252 kb on + strand at 871.254 kb on - strand at 871.632 kb on - strand, within Shewana3_0751 at 871.632 kb on - strand, within Shewana3_0751 at 871.632 kb on - strand, within Shewana3_0751 at 871.826 kb on + strand, within Shewana3_0751 at 871.835 kb on - strand, within Shewana3_0751 at 871.869 kb on - strand, within Shewana3_0751 at 872.076 kb on + strand at 872.084 kb on - strand at 872.084 kb on - strand at 872.241 kb on - strand at 872.325 kb on - strand, within Shewana3_0752 at 872.640 kb on - strand, within Shewana3_0752 at 872.678 kb on - strand, within Shewana3_0752 at 872.915 kb on - strand, within Shewana3_0752 at 873.077 kb on + strand, within Shewana3_0752 at 873.083 kb on - strand, within Shewana3_0752 at 873.143 kb on - strand, within Shewana3_0752 at 873.146 kb on + strand, within Shewana3_0752 at 873.261 kb on + strand, within Shewana3_0752 at 873.452 kb on + strand at 873.526 kb on - strand at 873.555 kb on + strand, within Shewana3_0753 at 873.686 kb on - strand, within Shewana3_0753 at 873.957 kb on - strand, within Shewana3_0753 at 874.080 kb on - strand at 874.254 kb on + strand at 874.264 kb on + strand at 874.303 kb on + strand at 874.317 kb on + strand at 874.354 kb on - strand at 874.378 kb on + strand at 874.388 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 871,226 - -4.8 871,252 + -5.2 871,254 - -3.1 871,632 - Shewana3_0751 0.25 -1.3 871,632 - Shewana3_0751 0.25 +0.1 871,632 - Shewana3_0751 0.25 +0.3 871,826 + Shewana3_0751 0.67 +0.5 871,835 - Shewana3_0751 0.69 +0.3 871,869 - Shewana3_0751 0.76 +0.1 872,076 + +0.7 872,084 - -1.1 872,084 - +0.3 872,241 - -0.1 872,325 - Shewana3_0752 0.15 +1.1 872,640 - Shewana3_0752 0.40 -0.2 872,678 - Shewana3_0752 0.43 -0.0 872,915 - Shewana3_0752 0.61 +0.3 873,077 + Shewana3_0752 0.74 +0.9 873,083 - Shewana3_0752 0.74 +0.8 873,143 - Shewana3_0752 0.79 +0.2 873,146 + Shewana3_0752 0.79 -1.1 873,261 + Shewana3_0752 0.88 +0.0 873,452 + +0.6 873,526 - +0.3 873,555 + Shewana3_0753 0.11 +0.3 873,686 - Shewana3_0753 0.35 -1.3 873,957 - Shewana3_0753 0.85 +0.3 874,080 - -1.0 874,254 + -0.0 874,264 + +0.3 874,303 + -0.3 874,317 + +0.5 874,354 - -0.6 874,378 + -1.6 874,388 - +0.7
Or see this region's nucleotide sequence