Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0498 and Shewana3_0499 are separated by 213 nucleotides Shewana3_0499 and Shewana3_0500 are separated by 249 nucleotides
Shewana3_0498: Shewana3_0498 - copper ABC transporter, permease protein (RefSeq), at 580,794 to 581,681
_0498
Shewana3_0499: Shewana3_0499 - transcriptional regulator (RefSeq), at 581,895 to 583,178
_0499
Shewana3_0500: Shewana3_0500 - peptidase M13 (RefSeq), at 583,428 to 585,560
_0500
Position (kb) 581
582
583
584 Strain fitness (log2 ratio) -2
-1
0
1 at 580.978 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.989 kb on - strand, within Shewana3_0498 at 580.989 kb on - strand, within Shewana3_0498 at 580.991 kb on + strand, within Shewana3_0498 at 580.991 kb on + strand, within Shewana3_0498 at 581.298 kb on + strand, within Shewana3_0498 at 581.368 kb on - strand, within Shewana3_0498 at 581.415 kb on + strand, within Shewana3_0498 at 581.416 kb on + strand, within Shewana3_0498 at 581.429 kb on - strand, within Shewana3_0498 at 581.441 kb on - strand, within Shewana3_0498 at 581.522 kb on - strand, within Shewana3_0498 at 581.553 kb on + strand, within Shewana3_0498 at 581.558 kb on + strand, within Shewana3_0498 at 581.558 kb on + strand, within Shewana3_0498 at 581.561 kb on - strand, within Shewana3_0498 at 581.563 kb on + strand, within Shewana3_0498 at 581.874 kb on + strand at 581.906 kb on - strand at 582.011 kb on + strand at 582.013 kb on + strand at 582.072 kb on - strand, within Shewana3_0499 at 582.187 kb on + strand, within Shewana3_0499 at 582.195 kb on - strand, within Shewana3_0499 at 582.204 kb on + strand, within Shewana3_0499 at 582.323 kb on - strand, within Shewana3_0499 at 582.420 kb on - strand, within Shewana3_0499 at 582.420 kb on - strand, within Shewana3_0499 at 582.436 kb on + strand, within Shewana3_0499 at 582.452 kb on - strand, within Shewana3_0499 at 582.520 kb on - strand, within Shewana3_0499 at 582.883 kb on + strand, within Shewana3_0499 at 583.142 kb on - strand at 583.193 kb on - strand at 583.222 kb on - strand at 583.265 kb on + strand at 583.265 kb on + strand at 583.460 kb on + strand at 583.622 kb on + strand at 583.629 kb on - strand at 583.751 kb on - strand, within Shewana3_0500 at 583.769 kb on + strand, within Shewana3_0500 at 583.832 kb on + strand, within Shewana3_0500 at 583.840 kb on - strand, within Shewana3_0500 at 583.840 kb on - strand, within Shewana3_0500 at 583.901 kb on - strand, within Shewana3_0500 at 583.936 kb on + strand, within Shewana3_0500 at 583.936 kb on + strand, within Shewana3_0500 at 583.943 kb on + strand, within Shewana3_0500 at 584.045 kb on + strand, within Shewana3_0500 at 584.064 kb on + strand, within Shewana3_0500 at 584.065 kb on + strand, within Shewana3_0500 at 584.065 kb on + strand, within Shewana3_0500
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 580,978 + Shewana3_0498 0.21 -1.0 580,981 + Shewana3_0498 0.21 -1.3 580,981 + Shewana3_0498 0.21 +0.5 580,981 + Shewana3_0498 0.21 -0.8 580,981 + Shewana3_0498 0.21 +0.6 580,989 - Shewana3_0498 0.22 -2.2 580,989 - Shewana3_0498 0.22 -1.9 580,991 + Shewana3_0498 0.22 +0.0 580,991 + Shewana3_0498 0.22 -0.7 581,298 + Shewana3_0498 0.57 +0.2 581,368 - Shewana3_0498 0.65 +0.5 581,415 + Shewana3_0498 0.70 +0.4 581,416 + Shewana3_0498 0.70 +0.3 581,429 - Shewana3_0498 0.72 +0.2 581,441 - Shewana3_0498 0.73 +0.5 581,522 - Shewana3_0498 0.82 -1.8 581,553 + Shewana3_0498 0.85 -1.6 581,558 + Shewana3_0498 0.86 +0.3 581,558 + Shewana3_0498 0.86 -0.8 581,561 - Shewana3_0498 0.86 +0.6 581,563 + Shewana3_0498 0.87 +0.1 581,874 + -1.2 581,906 - -0.9 582,011 + +1.0 582,013 + +0.3 582,072 - Shewana3_0499 0.14 +0.3 582,187 + Shewana3_0499 0.23 +0.5 582,195 - Shewana3_0499 0.23 +0.3 582,204 + Shewana3_0499 0.24 -0.1 582,323 - Shewana3_0499 0.33 -2.7 582,420 - Shewana3_0499 0.41 -1.0 582,420 - Shewana3_0499 0.41 -0.2 582,436 + Shewana3_0499 0.42 +0.9 582,452 - Shewana3_0499 0.43 -0.8 582,520 - Shewana3_0499 0.49 +0.7 582,883 + Shewana3_0499 0.77 -0.9 583,142 - -1.2 583,193 - -0.6 583,222 - +0.8 583,265 + +0.2 583,265 + +1.0 583,460 + +0.2 583,622 + +0.1 583,629 - -1.3 583,751 - Shewana3_0500 0.15 -1.5 583,769 + Shewana3_0500 0.16 -1.7 583,832 + Shewana3_0500 0.19 +0.4 583,840 - Shewana3_0500 0.19 +0.3 583,840 - Shewana3_0500 0.19 +0.5 583,901 - Shewana3_0500 0.22 +0.4 583,936 + Shewana3_0500 0.24 -1.4 583,936 + Shewana3_0500 0.24 -0.4 583,943 + Shewana3_0500 0.24 +0.7 584,045 + Shewana3_0500 0.29 +0.6 584,064 + Shewana3_0500 0.30 +1.0 584,065 + Shewana3_0500 0.30 +0.2 584,065 + Shewana3_0500 0.30 +0.5
Or see this region's nucleotide sequence