Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0437 and Shewana3_0438 are separated by 3 nucleotides Shewana3_0438 and Shewana3_0439 are separated by 157 nucleotides Shewana3_0439 and Shewana3_0440 are separated by 180 nucleotides
Shewana3_0437: Shewana3_0437 - short chain dehydrogenase (RefSeq), at 509,792 to 510,595
_0437
Shewana3_0438: Shewana3_0438 - hypothetical protein (RefSeq), at 510,599 to 510,823
_0438
Shewana3_0439: Shewana3_0439 - hypothetical protein (RefSeq), at 510,981 to 514,202
_0439
Shewana3_0440: Shewana3_0440 - phosphoribosylamine--glycine ligase (RefSeq), at 514,383 to 515,681
_0440
Position (kb) 510
511
512
513
514
515 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 509.991 kb on - strand, within Shewana3_0437 at 510.005 kb on + strand, within Shewana3_0437 at 510.039 kb on + strand, within Shewana3_0437 at 510.167 kb on + strand, within Shewana3_0437 at 510.175 kb on - strand, within Shewana3_0437 at 510.185 kb on - strand, within Shewana3_0437 at 510.202 kb on - strand, within Shewana3_0437 at 510.234 kb on - strand, within Shewana3_0437 at 510.399 kb on - strand, within Shewana3_0437 at 510.637 kb on - strand, within Shewana3_0438 at 510.733 kb on - strand, within Shewana3_0438 at 510.793 kb on + strand, within Shewana3_0438 at 510.849 kb on + strand at 510.857 kb on - strand at 510.881 kb on - strand at 510.948 kb on + strand at 510.953 kb on + strand at 510.979 kb on + strand at 511.059 kb on + strand at 511.104 kb on - strand at 511.122 kb on - strand at 511.230 kb on - strand at 511.320 kb on + strand, within Shewana3_0439 at 511.376 kb on + strand, within Shewana3_0439 at 511.649 kb on - strand, within Shewana3_0439 at 511.716 kb on - strand, within Shewana3_0439 at 511.764 kb on + strand, within Shewana3_0439 at 511.764 kb on + strand, within Shewana3_0439 at 512.003 kb on + strand, within Shewana3_0439 at 512.052 kb on - strand, within Shewana3_0439 at 512.113 kb on + strand, within Shewana3_0439 at 512.394 kb on + strand, within Shewana3_0439 at 512.441 kb on - strand, within Shewana3_0439 at 512.555 kb on - strand, within Shewana3_0439 at 512.564 kb on - strand, within Shewana3_0439 at 512.588 kb on + strand, within Shewana3_0439 at 512.593 kb on + strand, within Shewana3_0439 at 512.593 kb on + strand, within Shewana3_0439 at 512.593 kb on + strand, within Shewana3_0439 at 512.596 kb on - strand, within Shewana3_0439 at 512.635 kb on + strand, within Shewana3_0439 at 512.829 kb on + strand, within Shewana3_0439 at 513.222 kb on - strand, within Shewana3_0439 at 513.304 kb on - strand, within Shewana3_0439 at 513.378 kb on - strand, within Shewana3_0439 at 513.602 kb on + strand, within Shewana3_0439 at 513.737 kb on - strand, within Shewana3_0439 at 513.830 kb on + strand, within Shewana3_0439 at 513.838 kb on - strand, within Shewana3_0439 at 514.068 kb on - strand at 514.092 kb on + strand at 514.386 kb on + strand at 514.394 kb on - strand at 514.494 kb on - strand at 514.509 kb on + strand at 514.511 kb on - strand at 514.536 kb on + strand, within Shewana3_0440 at 514.552 kb on - strand, within Shewana3_0440 at 514.582 kb on + strand, within Shewana3_0440 at 514.613 kb on - strand, within Shewana3_0440 at 514.613 kb on - strand, within Shewana3_0440 at 514.713 kb on - strand, within Shewana3_0440 at 514.732 kb on + strand, within Shewana3_0440 at 514.845 kb on + strand, within Shewana3_0440 at 514.853 kb on - strand, within Shewana3_0440 at 514.919 kb on + strand, within Shewana3_0440 at 514.999 kb on - strand, within Shewana3_0440 at 515.103 kb on - strand, within Shewana3_0440
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 509,991 - Shewana3_0437 0.25 +0.6 510,005 + Shewana3_0437 0.26 -1.4 510,039 + Shewana3_0437 0.31 -1.1 510,167 + Shewana3_0437 0.47 -0.5 510,175 - Shewana3_0437 0.48 +0.3 510,185 - Shewana3_0437 0.49 +0.6 510,202 - Shewana3_0437 0.51 +0.8 510,234 - Shewana3_0437 0.55 +0.7 510,399 - Shewana3_0437 0.75 -1.4 510,637 - Shewana3_0438 0.17 +0.3 510,733 - Shewana3_0438 0.60 -1.1 510,793 + Shewana3_0438 0.86 +0.4 510,849 + -0.3 510,857 - +0.1 510,881 - -1.0 510,948 + +0.0 510,953 + -0.9 510,979 + +0.2 511,059 + -0.4 511,104 - +0.1 511,122 - +0.5 511,230 - +0.0 511,320 + Shewana3_0439 0.11 +0.6 511,376 + Shewana3_0439 0.12 +0.0 511,649 - Shewana3_0439 0.21 +0.6 511,716 - Shewana3_0439 0.23 +0.4 511,764 + Shewana3_0439 0.24 +1.8 511,764 + Shewana3_0439 0.24 -1.4 512,003 + Shewana3_0439 0.32 -1.7 512,052 - Shewana3_0439 0.33 +0.1 512,113 + Shewana3_0439 0.35 +0.3 512,394 + Shewana3_0439 0.44 +0.7 512,441 - Shewana3_0439 0.45 +0.7 512,555 - Shewana3_0439 0.49 -1.8 512,564 - Shewana3_0439 0.49 -1.3 512,588 + Shewana3_0439 0.50 -0.1 512,593 + Shewana3_0439 0.50 +0.1 512,593 + Shewana3_0439 0.50 -1.0 512,593 + Shewana3_0439 0.50 +0.4 512,596 - Shewana3_0439 0.50 +0.4 512,635 + Shewana3_0439 0.51 +0.8 512,829 + Shewana3_0439 0.57 +0.4 513,222 - Shewana3_0439 0.70 +0.5 513,304 - Shewana3_0439 0.72 +0.4 513,378 - Shewana3_0439 0.74 +0.3 513,602 + Shewana3_0439 0.81 +0.2 513,737 - Shewana3_0439 0.86 -1.4 513,830 + Shewana3_0439 0.88 +0.5 513,838 - Shewana3_0439 0.89 +0.0 514,068 - -0.2 514,092 + +0.4 514,386 + -2.4 514,394 - -3.4 514,494 - -4.9 514,509 + -5.6 514,511 - -5.8 514,536 + Shewana3_0440 0.12 -6.0 514,552 - Shewana3_0440 0.13 -6.6 514,582 + Shewana3_0440 0.15 -5.4 514,613 - Shewana3_0440 0.18 -5.0 514,613 - Shewana3_0440 0.18 -2.9 514,713 - Shewana3_0440 0.25 -2.9 514,732 + Shewana3_0440 0.27 -3.4 514,845 + Shewana3_0440 0.36 -4.2 514,853 - Shewana3_0440 0.36 -5.4 514,919 + Shewana3_0440 0.41 -4.6 514,999 - Shewana3_0440 0.47 -3.7 515,103 - Shewana3_0440 0.55 -4.9
Or see this region's nucleotide sequence