Strain Fitness in Shewanella amazonensis SB2B around Sama_2231

Experiment: Thymidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2229 and Sama_2230 overlap by 4 nucleotidesSama_2230 and Sama_2231 are separated by 139 nucleotidesSama_2231 and Sama_2232 are separated by 27 nucleotides Sama_2229: Sama_2229 - hypothetical protein (RefSeq), at 2,693,918 to 2,694,610 _2229 Sama_2230: Sama_2230 - hypothetical protein (RefSeq), at 2,694,607 to 2,695,344 _2230 Sama_2231: Sama_2231 - glucokinase (EC 2.7.1.2) (from data), at 2,695,484 to 2,696,383 _2231 Sama_2232: Sama_2232 - cysQ protein (RefSeq), at 2,696,411 to 2,697,256 _2232 Position (kb) 2695 2696 2697Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2694.536 kb on + strand, within Sama_2229at 2694.536 kb on + strand, within Sama_2229at 2694.537 kb on - strand, within Sama_2229at 2694.537 kb on - strand, within Sama_2229at 2694.537 kb on - strand, within Sama_2229at 2694.537 kb on - strand, within Sama_2229at 2694.540 kb on - strand, within Sama_2229at 2694.540 kb on - strand, within Sama_2229at 2694.647 kb on + strandat 2694.647 kb on + strandat 2694.647 kb on + strandat 2694.647 kb on + strandat 2694.648 kb on - strandat 2694.648 kb on - strandat 2694.648 kb on - strandat 2694.648 kb on - strandat 2694.648 kb on - strandat 2694.691 kb on + strand, within Sama_2230at 2694.787 kb on - strand, within Sama_2230at 2694.787 kb on - strand, within Sama_2230at 2694.787 kb on - strand, within Sama_2230at 2694.812 kb on - strand, within Sama_2230at 2694.812 kb on - strand, within Sama_2230at 2694.839 kb on - strand, within Sama_2230at 2694.839 kb on - strand, within Sama_2230at 2694.887 kb on - strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.957 kb on - strand, within Sama_2230at 2694.957 kb on - strand, within Sama_2230at 2694.957 kb on - strand, within Sama_2230at 2695.060 kb on + strand, within Sama_2230at 2695.061 kb on - strand, within Sama_2230at 2695.111 kb on + strand, within Sama_2230at 2695.149 kb on - strand, within Sama_2230at 2695.171 kb on + strand, within Sama_2230at 2695.222 kb on + strand, within Sama_2230at 2695.222 kb on + strand, within Sama_2230at 2695.223 kb on - strand, within Sama_2230at 2695.320 kb on - strandat 2695.349 kb on - strandat 2695.360 kb on + strandat 2695.383 kb on - strandat 2695.537 kb on - strandat 2695.537 kb on - strandat 2695.547 kb on + strandat 2695.548 kb on - strandat 2695.548 kb on - strandat 2695.581 kb on + strand, within Sama_2231at 2695.581 kb on + strand, within Sama_2231at 2695.581 kb on + strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.611 kb on + strand, within Sama_2231at 2695.611 kb on + strand, within Sama_2231at 2695.612 kb on - strand, within Sama_2231at 2695.612 kb on - strand, within Sama_2231at 2695.612 kb on - strand, within Sama_2231at 2695.612 kb on - strand, within Sama_2231at 2695.612 kb on - strand, within Sama_2231at 2695.634 kb on - strand, within Sama_2231at 2695.634 kb on - strand, within Sama_2231at 2695.634 kb on - strand, within Sama_2231at 2695.634 kb on - strand, within Sama_2231at 2695.670 kb on - strand, within Sama_2231at 2695.670 kb on - strand, within Sama_2231at 2695.670 kb on - strand, within Sama_2231at 2695.670 kb on - strand, within Sama_2231at 2695.721 kb on + strand, within Sama_2231at 2695.751 kb on + strand, within Sama_2231at 2695.752 kb on - strand, within Sama_2231at 2695.752 kb on - strand, within Sama_2231at 2696.039 kb on + strand, within Sama_2231at 2696.040 kb on - strand, within Sama_2231at 2696.100 kb on - strand, within Sama_2231at 2696.100 kb on - strand, within Sama_2231at 2696.134 kb on + strand, within Sama_2231at 2696.134 kb on + strand, within Sama_2231at 2696.170 kb on + strand, within Sama_2231at 2696.171 kb on - strand, within Sama_2231at 2696.171 kb on - strand, within Sama_2231at 2696.171 kb on - strand, within Sama_2231at 2696.173 kb on - strand, within Sama_2231at 2696.278 kb on - strand, within Sama_2231at 2696.296 kb on + strandat 2696.297 kb on - strandat 2696.297 kb on - strandat 2696.297 kb on - strandat 2696.297 kb on - strandat 2696.303 kb on - strandat 2696.413 kb on - strandat 2696.413 kb on - strandat 2696.503 kb on - strand, within Sama_2232at 2696.808 kb on + strand, within Sama_2232at 2696.809 kb on - strand, within Sama_2232at 2696.809 kb on - strand, within Sama_2232at 2696.816 kb on - strand, within Sama_2232at 2696.978 kb on - strand, within Sama_2232at 2697.043 kb on + strand, within Sama_2232at 2697.044 kb on - strand, within Sama_2232at 2697.117 kb on + strand, within Sama_2232at 2697.118 kb on - strand, within Sama_2232at 2697.128 kb on + strand, within Sama_2232at 2697.167 kb on - strand, within Sama_2232at 2697.181 kb on + strandat 2697.182 kb on - strandat 2697.202 kb on + strandat 2697.202 kb on + strandat 2697.202 kb on + strandat 2697.202 kb on + strandat 2697.202 kb on + strandat 2697.202 kb on + strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.203 kb on - strandat 2697.204 kb on + strandat 2697.204 kb on + strandat 2697.205 kb on - strandat 2697.205 kb on - strandat 2697.205 kb on - strandat 2697.258 kb on - strandat 2697.282 kb on + strandat 2697.316 kb on - strandat 2697.316 kb on - strandat 2697.318 kb on + strandat 2697.319 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine
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2,694,536 + Sama_2229 0.89 -2.1
2,694,536 + Sama_2229 0.89 +0.1
2,694,537 - Sama_2229 0.89 +0.4
2,694,537 - Sama_2229 0.89 +0.7
2,694,537 - Sama_2229 0.89 +0.4
2,694,537 - Sama_2229 0.89 -0.7
2,694,540 - Sama_2229 0.90 -1.8
2,694,540 - Sama_2229 0.90 +0.7
2,694,647 + +0.1
2,694,647 + +0.7
2,694,647 + +0.8
2,694,647 + -0.8
2,694,648 - -1.0
2,694,648 - -0.1
2,694,648 - -2.2
2,694,648 - -1.4
2,694,648 - -0.3
2,694,691 + Sama_2230 0.11 -0.4
2,694,787 - Sama_2230 0.24 +1.5
2,694,787 - Sama_2230 0.24 -0.4
2,694,787 - Sama_2230 0.24 -0.0
2,694,812 - Sama_2230 0.28 -2.2
2,694,812 - Sama_2230 0.28 -1.1
2,694,839 - Sama_2230 0.31 -0.6
2,694,839 - Sama_2230 0.31 -0.7
2,694,887 - Sama_2230 0.38 -0.1
2,694,956 + Sama_2230 0.47 +0.9
2,694,956 + Sama_2230 0.47 +0.9
2,694,956 + Sama_2230 0.47 +0.5
2,694,956 + Sama_2230 0.47 +0.1
2,694,956 + Sama_2230 0.47 +1.5
2,694,957 - Sama_2230 0.47 -0.7
2,694,957 - Sama_2230 0.47 -0.2
2,694,957 - Sama_2230 0.47 +0.4
2,695,060 + Sama_2230 0.61 +1.7
2,695,061 - Sama_2230 0.62 -0.6
2,695,111 + Sama_2230 0.68 +0.7
2,695,149 - Sama_2230 0.73 -1.2
2,695,171 + Sama_2230 0.76 +0.2
2,695,222 + Sama_2230 0.83 +0.3
2,695,222 + Sama_2230 0.83 -0.1
2,695,223 - Sama_2230 0.83 -0.3
2,695,320 - +0.2
2,695,349 - +0.1
2,695,360 + -1.7
2,695,383 - -1.4
2,695,537 - -1.1
2,695,537 - +0.0
2,695,547 + +0.3
2,695,548 - +0.1
2,695,548 - +0.1
2,695,581 + Sama_2231 0.11 -0.2
2,695,581 + Sama_2231 0.11 +0.8
2,695,581 + Sama_2231 0.11 -0.3
2,695,582 - Sama_2231 0.11 -0.4
2,695,582 - Sama_2231 0.11 -0.9
2,695,582 - Sama_2231 0.11 -0.4
2,695,582 - Sama_2231 0.11 -0.2
2,695,582 - Sama_2231 0.11 +1.1
2,695,582 - Sama_2231 0.11 -1.0
2,695,611 + Sama_2231 0.14 +0.5
2,695,611 + Sama_2231 0.14 +0.8
2,695,612 - Sama_2231 0.14 -1.0
2,695,612 - Sama_2231 0.14 -0.3
2,695,612 - Sama_2231 0.14 +0.2
2,695,612 - Sama_2231 0.14 +0.4
2,695,612 - Sama_2231 0.14 -1.3
2,695,634 - Sama_2231 0.17 +0.2
2,695,634 - Sama_2231 0.17 +0.8
2,695,634 - Sama_2231 0.17 -0.8
2,695,634 - Sama_2231 0.17 -0.2
2,695,670 - Sama_2231 0.21 +0.8
2,695,670 - Sama_2231 0.21 +0.8
2,695,670 - Sama_2231 0.21 -1.1
2,695,670 - Sama_2231 0.21 -0.8
2,695,721 + Sama_2231 0.26 +0.5
2,695,751 + Sama_2231 0.30 -0.8
2,695,752 - Sama_2231 0.30 +0.9
2,695,752 - Sama_2231 0.30 -0.4
2,696,039 + Sama_2231 0.62 -1.8
2,696,040 - Sama_2231 0.62 +1.2
2,696,100 - Sama_2231 0.68 +0.3
2,696,100 - Sama_2231 0.68 -1.3
2,696,134 + Sama_2231 0.72 +0.8
2,696,134 + Sama_2231 0.72 +0.1
2,696,170 + Sama_2231 0.76 +1.0
2,696,171 - Sama_2231 0.76 +0.8
2,696,171 - Sama_2231 0.76 +0.9
2,696,171 - Sama_2231 0.76 +0.4
2,696,173 - Sama_2231 0.77 -1.1
2,696,278 - Sama_2231 0.88 -0.1
2,696,296 + +1.1
2,696,297 - -0.1
2,696,297 - +2.2
2,696,297 - -1.5
2,696,297 - +0.1
2,696,303 - +2.2
2,696,413 - -1.5
2,696,413 - -0.1
2,696,503 - Sama_2232 0.11 -2.7
2,696,808 + Sama_2232 0.47 -1.8
2,696,809 - Sama_2232 0.47 -3.0
2,696,809 - Sama_2232 0.47 -2.7
2,696,816 - Sama_2232 0.48 -2.7
2,696,978 - Sama_2232 0.67 -2.1
2,697,043 + Sama_2232 0.75 -2.3
2,697,044 - Sama_2232 0.75 -3.3
2,697,117 + Sama_2232 0.83 -2.5
2,697,118 - Sama_2232 0.84 -3.9
2,697,128 + Sama_2232 0.85 -2.8
2,697,167 - Sama_2232 0.89 -2.3
2,697,181 + -1.4
2,697,182 - -4.0
2,697,202 + -2.3
2,697,202 + -1.3
2,697,202 + -1.5
2,697,202 + -2.3
2,697,202 + -1.5
2,697,202 + -0.5
2,697,203 - +0.9
2,697,203 - -0.9
2,697,203 - +0.7
2,697,203 - +0.5
2,697,203 - -0.5
2,697,203 - -0.3
2,697,203 - +0.4
2,697,203 - -0.7
2,697,204 + -2.3
2,697,204 + -0.5
2,697,205 - +0.5
2,697,205 - -0.5
2,697,205 - +0.7
2,697,258 - -1.7
2,697,282 + -1.4
2,697,316 - -1.2
2,697,316 - -0.1
2,697,318 + -0.7
2,697,319 - -0.0

Or see this region's nucleotide sequence