Strain Fitness in Shewanella amazonensis SB2B

Strain Fitness in Shewanella amazonensis SB2B around Sama_1192

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Thymidine
				remove
1,458,681	-	Sama_1190	0.84	-0.0
1,458,681	-	Sama_1190	0.84	-0.3
1,458,684	+	Sama_1190	0.85	-0.1
1,458,684	+	Sama_1190	0.85	+0.3
1,458,684	+	Sama_1190	0.85	-1.3
1,458,685	-	Sama_1190	0.85	+0.3
1,458,685	-	Sama_1190	0.85	-0.0
1,458,685	-	Sama_1190	0.85	+2.4
1,458,685	-	Sama_1190	0.85	-2.0
1,458,753	+			+1.1
1,458,755	+			+1.2
1,458,755	+			-0.7
1,458,755	+			+0.0
1,458,767	+			-1.1
1,458,768	-			+0.0
1,458,799	+			-1.0
1,458,831	+			+0.6
1,458,831	+			+0.1
1,458,831	+			-1.7
1,458,832	-			+1.4
1,458,844	+			+0.3
1,458,845	-			-0.7
1,458,845	-			-0.7
1,458,885	+			+1.1
1,458,885	+			-0.1
1,458,953	+	Sama_1191	0.15	-0.1
1,458,954	-	Sama_1191	0.15	+0.8
1,459,016	+	Sama_1191	0.24	+0.0
1,459,017	-	Sama_1191	0.24	+0.3
1,459,151	-	Sama_1191	0.43	-0.1
1,459,184	-	Sama_1191	0.48	+0.6
1,459,353	-	Sama_1191	0.72	+0.5
1,459,353	-	Sama_1191	0.72	-2.2
1,459,429	+	Sama_1191	0.82	-1.1
1,459,430	-	Sama_1191	0.83	-0.5
1,459,468	+	Sama_1191	0.88	-0.3
1,459,560	-			+0.0
1,459,590	-			-0.1
1,459,654	+			-0.3
1,459,654	+			-0.4
1,459,655	-			+0.2
1,459,655	-			+0.0
1,459,655	-			+0.3
1,459,655	-			+1.0
1,459,655	-			-0.9
1,459,655	-			-0.8
1,459,681	+			+0.4
1,459,681	+			-2.0
1,459,751	-			-2.3
1,459,755	+			+0.9
1,459,755	+			+0.4
1,459,755	+			-0.1
1,459,755	+			+0.8
1,459,756	-			+0.1
1,459,756	-			-0.6
1,459,756	-			+1.3
1,459,778	-			-0.5
1,459,844	-			+1.4
1,459,844	-			+0.4
1,459,867	+			-0.9
1,459,867	+			+0.5
1,459,868	-			-1.0
1,459,894	+	Sama_1192	0.10	+0.6
1,459,895	-	Sama_1192	0.10	+0.1
1,459,895	-	Sama_1192	0.10	+0.8
1,459,895	-	Sama_1192	0.10	+0.8
1,459,955	-	Sama_1192	0.12	-0.4
1,459,969	+	Sama_1192	0.13	-1.3
1,459,969	+	Sama_1192	0.13	+0.9
1,459,969	+	Sama_1192	0.13	+0.6
1,459,969	+	Sama_1192	0.13	+0.9
1,459,969	+	Sama_1192	0.13	+0.6
1,459,969	+	Sama_1192	0.13	-1.0
1,459,970	-	Sama_1192	0.13	-0.1
1,459,970	-	Sama_1192	0.13	-2.1
1,459,970	-	Sama_1192	0.13	+0.3
1,459,970	-	Sama_1192	0.13	+1.0
1,459,970	-	Sama_1192	0.13	-0.2
1,459,970	-	Sama_1192	0.13	-2.0
1,459,970	-	Sama_1192	0.13	+0.2
1,459,975	+	Sama_1192	0.13	+0.2
1,459,975	+	Sama_1192	0.13	-1.5
1,459,975	+	Sama_1192	0.13	-0.6
1,459,975	+	Sama_1192	0.13	+0.9
1,459,976	-	Sama_1192	0.13	+1.2
1,459,976	-	Sama_1192	0.13	+0.2
1,459,976	-	Sama_1192	0.13	-1.0
1,459,976	-	Sama_1192	0.13	-0.8
1,460,072	-	Sama_1192	0.17	+0.8
1,460,099	+	Sama_1192	0.17	+0.4
1,460,099	+	Sama_1192	0.17	-0.2
1,460,099	+	Sama_1192	0.17	+1.2
1,460,100	-	Sama_1192	0.17	+1.3
1,460,100	-	Sama_1192	0.17	-0.9
1,460,100	-	Sama_1192	0.17	+1.1
1,460,101	+	Sama_1192	0.18	+0.9
1,460,101	+	Sama_1192	0.18	+0.2
1,460,101	+	Sama_1192	0.18	-0.2
1,460,101	+	Sama_1192	0.18	-0.3
1,460,101	+	Sama_1192	0.18	+1.8
1,460,101	+	Sama_1192	0.18	+0.0
1,460,102	-	Sama_1192	0.18	+0.0
1,460,102	-	Sama_1192	0.18	+0.2
1,460,102	-	Sama_1192	0.18	+0.5
1,460,200	+	Sama_1192	0.21	+2.3
1,460,200	+	Sama_1192	0.21	-1.3
1,460,200	+	Sama_1192	0.21	-0.5
1,460,200	+	Sama_1192	0.21	+0.7
1,460,201	-	Sama_1192	0.21	-1.6
1,460,201	-	Sama_1192	0.21	+0.1
1,460,203	+	Sama_1192	0.21	+0.4
1,460,230	+	Sama_1192	0.22	+1.0
1,460,247	+	Sama_1192	0.23	-0.2
1,460,247	+	Sama_1192	0.23	+0.2
1,460,248	-	Sama_1192	0.23	+1.0
1,460,248	-	Sama_1192	0.23	+1.2
1,460,259	-	Sama_1192	0.23	-1.0
1,460,259	-	Sama_1192	0.23	+0.4
1,460,319	-	Sama_1192	0.25	+0.0
1,460,329	+	Sama_1192	0.26	+0.6
1,460,330	-	Sama_1192	0.26	+0.0
1,460,428	+	Sama_1192	0.29	-0.8
1,460,428	+	Sama_1192	0.29	-1.0
1,460,429	-	Sama_1192	0.29	+0.2
1,460,429	-	Sama_1192	0.29	+0.6
1,460,471	+	Sama_1192	0.31	+0.4
1,460,474	+	Sama_1192	0.31	-0.9
1,460,474	+	Sama_1192	0.31	+1.0
1,460,474	+	Sama_1192	0.31	+0.5
1,460,475	-	Sama_1192	0.31	+0.0
1,460,475	-	Sama_1192	0.31	-0.5
1,460,475	-	Sama_1192	0.31	-0.8
1,460,475	-	Sama_1192	0.31	-0.9
1,460,538	+	Sama_1192	0.33	+0.4
1,460,578	+	Sama_1192	0.34	-2.2
1,460,578	+	Sama_1192	0.34	+1.3
1,460,578	+	Sama_1192	0.34	+0.9
1,460,578	+	Sama_1192	0.34	+0.5
1,460,579	-	Sama_1192	0.34	-2.4
1,460,579	-	Sama_1192	0.34	-0.3
1,460,579	-	Sama_1192	0.34	+0.6
1,460,579	-	Sama_1192	0.34	+1.4
1,460,579	-	Sama_1192	0.34	-0.1
1,460,643	+	Sama_1192	0.37	+0.3
1,460,643	+	Sama_1192	0.37	+0.0
1,460,644	-	Sama_1192	0.37	+0.6
1,460,644	-	Sama_1192	0.37	+1.0
1,460,644	-	Sama_1192	0.37	-0.3
1,460,644	-	Sama_1192	0.37	-0.1
1,460,651	-	Sama_1192	0.37	+0.3
1,460,651	-	Sama_1192	0.37	-0.7
1,460,679	+	Sama_1192	0.38	+0.2
1,460,680	-	Sama_1192	0.38	+0.5
1,460,716	+	Sama_1192	0.39	-1.2
1,460,716	+	Sama_1192	0.39	-1.0
1,460,717	-	Sama_1192	0.39	-2.2
1,460,737	+	Sama_1192	0.40	-1.1
1,460,737	+	Sama_1192	0.40	+0.3
1,460,737	+	Sama_1192	0.40	-0.8
1,460,738	-	Sama_1192	0.40	+1.5
1,460,738	-	Sama_1192	0.40	+0.1
1,460,856	-	Sama_1192	0.44	+0.1
1,460,859	+	Sama_1192	0.44	+0.0
1,460,860	-	Sama_1192	0.44	-1.0
1,460,899	+	Sama_1192	0.46	+1.2
1,460,900	-	Sama_1192	0.46	-1.6
1,460,930	+	Sama_1192	0.47	+0.3
1,460,971	+	Sama_1192	0.48	-0.5
1,460,971	+	Sama_1192	0.48	+0.6
1,461,019	+	Sama_1192	0.50	-0.3
1,461,020	-	Sama_1192	0.50	-0.4
1,461,076	+	Sama_1192	0.52	+0.3
1,461,076	+	Sama_1192	0.52	-0.2
1,461,076	+	Sama_1192	0.52	+0.6
1,461,076	+	Sama_1192	0.52	-0.6
1,461,076	+	Sama_1192	0.52	+0.2
1,461,076	+	Sama_1192	0.52	-0.7
1,461,076	+	Sama_1192	0.52	+0.7
1,461,077	-	Sama_1192	0.52	-0.2
1,461,082	+	Sama_1192	0.52	-2.2
1,461,082	+	Sama_1192	0.52	+0.4
1,461,083	-	Sama_1192	0.52	+1.3
1,461,094	+	Sama_1192	0.52	+0.2
1,461,095	-	Sama_1192	0.52	-0.8
1,461,123	+	Sama_1192	0.53	+0.1
1,461,123	+	Sama_1192	0.53	-0.1
1,461,144	-	Sama_1192	0.54	-0.2
1,461,146	+	Sama_1192	0.54	+1.4
1,461,146	+	Sama_1192	0.54	-1.4
1,461,146	+	Sama_1192	0.54	+0.3
1,461,147	-	Sama_1192	0.54	-0.4
1,461,147	-	Sama_1192	0.54	+0.0
1,461,147	-	Sama_1192	0.54	-0.4
1,461,147	-	Sama_1192	0.54	-1.0
1,461,147	-	Sama_1192	0.54	+0.3
1,461,157	+	Sama_1192	0.55	+0.6
1,461,196	-	Sama_1192	0.56	-0.3
1,461,238	+	Sama_1192	0.57	-0.9
1,461,239	-	Sama_1192	0.57	-0.2
1,461,253	+	Sama_1192	0.58	-2.2
1,461,254	-	Sama_1192	0.58	-1.4
1,461,255	+	Sama_1192	0.58	+0.1
1,461,255	+	Sama_1192	0.58	+0.3
1,461,255	+	Sama_1192	0.58	-0.2
1,461,255	+	Sama_1192	0.58	-0.6
1,461,357	-	Sama_1192	0.62	+0.1
1,461,490	+	Sama_1192	0.66	+0.6
1,461,598	+	Sama_1192	0.70	-1.2
1,461,598	+	Sama_1192	0.70	+0.6
1,461,599	-	Sama_1192	0.70	+0.2
1,461,599	-	Sama_1192	0.70	+0.1
1,461,599	-	Sama_1192	0.70	-1.1
1,461,599	-	Sama_1192	0.70	-0.3
1,461,599	-	Sama_1192	0.70	-0.3
1,461,599	-	Sama_1192	0.70	+1.1
1,461,599	-	Sama_1192	0.70	-0.1
1,461,599	-	Sama_1192	0.70	-1.6
1,461,602	+	Sama_1192	0.70	+0.0
1,461,602	+	Sama_1192	0.70	+0.4
1,461,602	+	Sama_1192	0.70	+0.0
1,461,602	+	Sama_1192	0.70	-0.1
1,461,602	+	Sama_1192	0.70	+0.2
1,461,602	+	Sama_1192	0.70	-0.1
1,461,602	+	Sama_1192	0.70	+0.4
1,461,602	+	Sama_1192	0.70	-0.1
1,461,602	+	Sama_1192	0.70	-1.1
1,461,603	-	Sama_1192	0.70	-0.2
1,461,603	-	Sama_1192	0.70	-0.4
1,461,603	-	Sama_1192	0.70	-0.9
1,461,603	-	Sama_1192	0.70	-0.4
1,461,603	-	Sama_1192	0.70	+0.4
1,461,603	-	Sama_1192	0.70	-0.7
1,461,603	-	Sama_1192	0.70	-0.9
1,461,603	-	Sama_1192	0.70	-2.0
1,461,603	-	Sama_1192	0.70	-2.0
1,461,603	-	Sama_1192	0.70	+1.2
1,461,603	-	Sama_1192	0.70	-0.1
1,461,604	+	Sama_1192	0.70	-0.2
1,461,604	+	Sama_1192	0.70	-0.7
1,461,604	+	Sama_1192	0.70	-1.9
1,461,604	+	Sama_1192	0.70	+1.1
1,461,604	+	Sama_1192	0.70	-0.1
1,461,604	+	Sama_1192	0.70	+0.0
1,461,605	-	Sama_1192	0.70	-0.4
1,461,605	-	Sama_1192	0.70	+2.5
1,461,605	-	Sama_1192	0.70	-3.0
1,461,605	-	Sama_1192	0.70	+0.1
1,461,605	-	Sama_1192	0.70	+0.6
1,461,605	-	Sama_1192	0.70	+0.6
1,461,605	-	Sama_1192	0.70	+0.1
1,461,605	-	Sama_1192	0.70	+0.8
1,461,605	-	Sama_1192	0.70	-0.6
1,461,605	-	Sama_1192	0.70	-1.0
1,461,605	-	Sama_1192	0.70	+0.8
1,461,605	-	Sama_1192	0.70	-1.7
1,461,605	-	Sama_1192	0.70	-1.4
1,461,730	+	Sama_1192	0.75	-1.2
1,461,730	+	Sama_1192	0.75	+1.2
1,461,730	+	Sama_1192	0.75	+0.8
1,461,730	+	Sama_1192	0.75	+1.3
1,461,730	+	Sama_1192	0.75	-0.1
1,461,730	+	Sama_1192	0.75	-0.3
1,461,730	+	Sama_1192	0.75	-0.7
1,461,730	+	Sama_1192	0.75	+0.2
1,461,730	+	Sama_1192	0.75	+0.3
1,461,730	+	Sama_1192	0.75	-1.1
1,461,731	-	Sama_1192	0.75	-0.5
1,461,731	-	Sama_1192	0.75	-1.0
1,461,731	-	Sama_1192	0.75	+0.6
1,461,760	+	Sama_1192	0.76	+0.3
1,461,762	+	Sama_1192	0.76	+0.1
1,461,762	+	Sama_1192	0.76	-0.1
1,461,762	+	Sama_1192	0.76	-2.2
1,461,927	+	Sama_1192	0.82	+0.2
1,461,973	+	Sama_1192	0.83	-0.1
1,461,973	+	Sama_1192	0.83	-1.1
1,461,973	+	Sama_1192	0.83	+1.3
1,461,974	-	Sama_1192	0.83	-1.5
1,461,974	-	Sama_1192	0.83	-0.6
1,461,974	-	Sama_1192	0.83	+1.9
1,462,011	-	Sama_1192	0.85	+1.4
1,462,036	+	Sama_1192	0.85	+0.6
1,462,077	-	Sama_1192	0.87	-1.0
1,462,078	+	Sama_1192	0.87	-0.4
1,462,079	-	Sama_1192	0.87	+2.0
1,462,079	-	Sama_1192	0.87	+0.1
1,462,152	-	Sama_1192	0.90	-1.0
1,462,152	-	Sama_1192	0.90	+0.1
1,462,194	+			-0.4
1,462,195	-			-0.2
1,462,195	-			+0.5
1,462,195	-			-0.9
1,462,195	-			+0.8
1,462,195	-			-0.5
1,462,195	-			-1.0
1,462,195	-			-0.2
1,462,195	-			-0.8
1,462,195	-			+0.7
1,462,290	-			+0.0
1,462,434	-			-0.2
1,462,437	+			-0.1
1,462,437	+			+0.7
1,462,437	+			-0.5
1,462,437	+			+0.4
1,462,438	-			-0.4
1,462,438	-			-1.6
1,462,582	+			-0.1
1,462,655	+			-0.4
1,462,655	+			-1.0
1,462,655	+			+1.6
1,462,655	+			-0.7
1,462,655	+			+1.3
1,462,655	+			+0.6
1,462,655	+			+0.6
1,462,656	-			-2.5
1,462,656	-			+0.6
1,462,656	-			+0.5
1,462,656	-			+1.2
1,462,656	-			+2.0
1,462,686	+			+1.1
1,462,686	+			-0.7
1,462,739	+			-0.8
1,462,739	+			+0.7
1,462,739	+			+0.2
1,462,740	-			+0.3
1,462,740	-			-0.7
1,462,740	-			+1.3
1,462,796	+			-1.0
1,462,796	+			+0.7
1,462,796	+			-0.4
1,462,796	+			-0.4
1,462,797	-			-2.1
1,462,797	-			-1.0
1,462,962	+	Sama_1193	0.24	-2.1
1,463,089	-	Sama_1193	0.40	-0.4
1,463,136	+	Sama_1193	0.46	-1.9
1,463,162	+	Sama_1193	0.49	-0.3
1,463,162	+	Sama_1193	0.49	+0.6
1,463,162	+	Sama_1193	0.49	-1.9
1,463,162	+	Sama_1193	0.49	+0.6
1,463,162	+	Sama_1193	0.49	-2.0
1,463,162	+	Sama_1193	0.49	-1.1
1,463,163	-	Sama_1193	0.49	-1.4
1,463,163	-	Sama_1193	0.49	-0.4
1,463,163	-	Sama_1193	0.49	-0.7
1,463,275	+	Sama_1193	0.64	+0.0
1,463,276	-	Sama_1193	0.64	-2.2
1,463,396	+	Sama_1193	0.79	-0.7
1,463,396	+	Sama_1193	0.79	-1.7
1,463,397	-	Sama_1193	0.79	+0.6
1,463,397	-	Sama_1193	0.79	-1.2

Or see this region's nucleotide sequence