Experiment: Thymidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0480 and Sama_0481 are separated by 51 nucleotides Sama_0481 and Sama_0482 are separated by 148 nucleotides Sama_0482 and Sama_0483 are separated by 108 nucleotides
Sama_0480: Sama_0480 - hypothetical protein (RefSeq), at 591,059 to 592,219
_0480
Sama_0481: Sama_0481 - hypothetical protein (RefSeq), at 592,271 to 592,819
_0481
Sama_0482: Sama_0482 - PmbA protein (RefSeq), at 592,968 to 594,329
_0482
Sama_0483: Sama_0483 - hypothetical protein (RefSeq), at 594,438 to 595,316
_0483
Position (kb) 592
593
594
595 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 592.060 kb on + strand, within Sama_0480 at 592.060 kb on + strand, within Sama_0480 at 592.142 kb on + strand at 592.143 kb on - strand at 592.143 kb on - strand at 592.285 kb on + strand at 592.285 kb on + strand at 592.286 kb on - strand at 592.286 kb on - strand at 592.286 kb on - strand at 592.300 kb on - strand at 592.300 kb on - strand at 592.542 kb on - strand, within Sama_0481 at 592.562 kb on - strand, within Sama_0481 at 592.579 kb on + strand, within Sama_0481 at 592.580 kb on - strand, within Sama_0481 at 592.580 kb on - strand, within Sama_0481 at 592.761 kb on + strand, within Sama_0481 at 592.779 kb on + strand at 592.780 kb on - strand at 592.780 kb on - strand at 592.837 kb on - strand at 592.862 kb on + strand at 592.862 kb on + strand at 592.862 kb on + strand at 592.863 kb on - strand at 592.863 kb on - strand at 592.863 kb on - strand at 592.863 kb on - strand at 592.863 kb on - strand at 592.947 kb on + strand at 592.947 kb on + strand at 592.947 kb on + strand at 592.948 kb on - strand at 592.948 kb on - strand at 592.954 kb on - strand at 593.156 kb on + strand, within Sama_0482 at 593.224 kb on + strand, within Sama_0482 at 593.251 kb on + strand, within Sama_0482 at 593.252 kb on - strand, within Sama_0482 at 593.267 kb on + strand, within Sama_0482 at 593.268 kb on - strand, within Sama_0482 at 593.277 kb on + strand, within Sama_0482 at 593.277 kb on + strand, within Sama_0482 at 593.277 kb on + strand, within Sama_0482 at 593.278 kb on - strand, within Sama_0482 at 593.278 kb on - strand, within Sama_0482 at 593.279 kb on + strand, within Sama_0482 at 593.280 kb on - strand, within Sama_0482 at 593.297 kb on + strand, within Sama_0482 at 593.328 kb on - strand, within Sama_0482 at 593.352 kb on + strand, within Sama_0482 at 593.352 kb on + strand, within Sama_0482 at 593.352 kb on + strand, within Sama_0482 at 593.353 kb on - strand, within Sama_0482 at 593.353 kb on - strand, within Sama_0482 at 593.487 kb on + strand, within Sama_0482 at 593.487 kb on + strand, within Sama_0482 at 593.487 kb on + strand, within Sama_0482 at 593.487 kb on + strand, within Sama_0482 at 593.487 kb on + strand, within Sama_0482 at 593.487 kb on + strand, within Sama_0482 at 593.517 kb on + strand, within Sama_0482 at 593.518 kb on - strand, within Sama_0482 at 593.532 kb on + strand, within Sama_0482 at 593.533 kb on - strand, within Sama_0482 at 593.533 kb on - strand, within Sama_0482 at 593.533 kb on - strand, within Sama_0482 at 593.539 kb on + strand, within Sama_0482 at 593.539 kb on + strand, within Sama_0482 at 593.539 kb on + strand, within Sama_0482 at 593.589 kb on + strand, within Sama_0482 at 593.596 kb on - strand, within Sama_0482 at 593.613 kb on + strand, within Sama_0482 at 593.613 kb on + strand, within Sama_0482 at 593.614 kb on - strand, within Sama_0482 at 593.614 kb on - strand, within Sama_0482 at 593.614 kb on - strand, within Sama_0482 at 593.669 kb on - strand, within Sama_0482 at 593.702 kb on + strand, within Sama_0482 at 593.702 kb on + strand, within Sama_0482 at 593.702 kb on + strand, within Sama_0482 at 593.702 kb on + strand, within Sama_0482 at 593.703 kb on - strand, within Sama_0482 at 593.703 kb on - strand, within Sama_0482 at 593.703 kb on - strand, within Sama_0482 at 593.756 kb on + strand, within Sama_0482 at 593.757 kb on - strand, within Sama_0482 at 593.757 kb on - strand, within Sama_0482 at 593.757 kb on - strand, within Sama_0482 at 593.757 kb on - strand, within Sama_0482 at 593.784 kb on + strand, within Sama_0482 at 593.784 kb on + strand, within Sama_0482 at 593.892 kb on + strand, within Sama_0482 at 593.893 kb on - strand, within Sama_0482 at 593.893 kb on - strand, within Sama_0482 at 593.893 kb on - strand, within Sama_0482 at 593.955 kb on + strand, within Sama_0482 at 593.955 kb on + strand, within Sama_0482 at 593.955 kb on + strand, within Sama_0482 at 593.956 kb on - strand, within Sama_0482 at 593.956 kb on - strand, within Sama_0482 at 593.970 kb on + strand, within Sama_0482 at 594.000 kb on - strand, within Sama_0482 at 594.000 kb on - strand, within Sama_0482 at 594.021 kb on + strand, within Sama_0482 at 594.021 kb on + strand, within Sama_0482 at 594.022 kb on - strand, within Sama_0482 at 594.022 kb on - strand, within Sama_0482 at 594.022 kb on - strand, within Sama_0482 at 594.022 kb on - strand, within Sama_0482 at 594.022 kb on - strand, within Sama_0482 at 594.068 kb on - strand, within Sama_0482 at 594.103 kb on + strand, within Sama_0482 at 594.103 kb on + strand, within Sama_0482 at 594.138 kb on + strand, within Sama_0482 at 594.138 kb on + strand, within Sama_0482 at 594.138 kb on + strand, within Sama_0482 at 594.138 kb on + strand, within Sama_0482 at 594.139 kb on - strand, within Sama_0482 at 594.139 kb on - strand, within Sama_0482 at 594.139 kb on - strand, within Sama_0482 at 594.162 kb on + strand, within Sama_0482 at 594.162 kb on + strand, within Sama_0482 at 594.162 kb on + strand, within Sama_0482 at 594.163 kb on - strand, within Sama_0482 at 594.163 kb on - strand, within Sama_0482 at 594.203 kb on + strand at 594.231 kb on + strand at 594.231 kb on + strand at 594.231 kb on + strand at 594.231 kb on + strand at 594.231 kb on + strand at 594.231 kb on + strand at 594.231 kb on + strand at 594.232 kb on - strand at 594.232 kb on - strand at 594.232 kb on - strand at 594.232 kb on - strand at 594.232 kb on - strand at 594.232 kb on - strand at 594.293 kb on + strand at 594.336 kb on + strand at 594.337 kb on - strand at 594.337 kb on - strand at 594.343 kb on - strand at 594.343 kb on - strand at 594.371 kb on + strand at 594.371 kb on + strand at 594.371 kb on + strand at 594.383 kb on + strand at 594.393 kb on + strand at 594.393 kb on + strand at 594.393 kb on + strand at 594.394 kb on - strand at 594.394 kb on - strand at 594.394 kb on - strand at 594.394 kb on - strand at 594.416 kb on + strand at 594.417 kb on - strand at 594.477 kb on - strand at 594.477 kb on - strand at 594.522 kb on + strand at 594.522 kb on + strand at 594.522 kb on + strand at 594.522 kb on + strand at 594.522 kb on + strand at 594.522 kb on + strand at 594.523 kb on - strand at 594.523 kb on - strand at 594.523 kb on - strand at 594.538 kb on + strand, within Sama_0483 at 594.547 kb on - strand, within Sama_0483 at 594.583 kb on - strand, within Sama_0483 at 594.583 kb on - strand, within Sama_0483 at 594.602 kb on + strand, within Sama_0483 at 594.602 kb on + strand, within Sama_0483 at 594.602 kb on + strand, within Sama_0483 at 594.603 kb on - strand, within Sama_0483 at 594.603 kb on - strand, within Sama_0483 at 594.603 kb on - strand, within Sama_0483 at 594.603 kb on - strand, within Sama_0483 at 594.616 kb on - strand, within Sama_0483 at 594.720 kb on - strand, within Sama_0483 at 594.752 kb on + strand, within Sama_0483 at 594.752 kb on + strand, within Sama_0483 at 594.781 kb on + strand, within Sama_0483 at 594.781 kb on + strand, within Sama_0483 at 594.781 kb on + strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.782 kb on - strand, within Sama_0483 at 594.784 kb on + strand, within Sama_0483 at 594.794 kb on + strand, within Sama_0483 at 594.805 kb on + strand, within Sama_0483 at 594.806 kb on - strand, within Sama_0483 at 594.809 kb on + strand, within Sama_0483 at 594.810 kb on - strand, within Sama_0483 at 594.810 kb on - strand, within Sama_0483 at 594.810 kb on - strand, within Sama_0483 at 594.842 kb on + strand, within Sama_0483 at 594.843 kb on - strand, within Sama_0483 at 594.914 kb on - strand, within Sama_0483 at 594.914 kb on - strand, within Sama_0483 at 594.971 kb on + strand, within Sama_0483 at 594.971 kb on + strand, within Sama_0483 at 594.974 kb on + strand, within Sama_0483 at 595.004 kb on + strand, within Sama_0483 at 595.004 kb on + strand, within Sama_0483 at 595.004 kb on + strand, within Sama_0483 at 595.005 kb on - strand, within Sama_0483 at 595.005 kb on - strand, within Sama_0483 at 595.005 kb on - strand, within Sama_0483 at 595.005 kb on - strand, within Sama_0483 at 595.006 kb on + strand, within Sama_0483 at 595.006 kb on + strand, within Sama_0483 at 595.007 kb on - strand, within Sama_0483 at 595.007 kb on - strand, within Sama_0483 at 595.042 kb on + strand, within Sama_0483 at 595.042 kb on + strand, within Sama_0483 at 595.042 kb on + strand, within Sama_0483 at 595.043 kb on - strand, within Sama_0483 at 595.061 kb on + strand, within Sama_0483 at 595.079 kb on - strand, within Sama_0483 at 595.079 kb on - strand, within Sama_0483 at 595.112 kb on + strand, within Sama_0483 at 595.113 kb on - strand, within Sama_0483 at 595.113 kb on - strand, within Sama_0483 at 595.137 kb on + strand, within Sama_0483 at 595.220 kb on + strand, within Sama_0483 at 595.220 kb on + strand, within Sama_0483 at 595.221 kb on - strand, within Sama_0483 at 595.222 kb on + strand, within Sama_0483 at 595.222 kb on + strand, within Sama_0483 at 595.302 kb on + strand at 595.303 kb on - strand at 595.318 kb on + strand at 595.318 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine remove 592,060 + Sama_0480 0.86 +0.8 592,060 + Sama_0480 0.86 -1.4 592,142 + -1.8 592,143 - +0.2 592,143 - -0.6 592,285 + +1.2 592,285 + +0.4 592,286 - -0.3 592,286 - +0.2 592,286 - +1.5 592,300 - +1.3 592,300 - +0.9 592,542 - Sama_0481 0.49 +0.4 592,562 - Sama_0481 0.53 +0.4 592,579 + Sama_0481 0.56 -0.5 592,580 - Sama_0481 0.56 -0.1 592,580 - Sama_0481 0.56 +0.4 592,761 + Sama_0481 0.89 +0.9 592,779 + +0.9 592,780 - -0.9 592,780 - -1.6 592,837 - +0.9 592,862 + -0.8 592,862 + +0.4 592,862 + -0.3 592,863 - -2.2 592,863 - -1.1 592,863 - +0.4 592,863 - -0.8 592,863 - -0.3 592,947 + +1.3 592,947 + -1.3 592,947 + -0.1 592,948 - -1.1 592,948 - -2.5 592,954 - -0.3 593,156 + Sama_0482 0.14 -2.1 593,224 + Sama_0482 0.19 -0.5 593,251 + Sama_0482 0.21 +0.4 593,252 - Sama_0482 0.21 -2.1 593,267 + Sama_0482 0.22 -0.9 593,268 - Sama_0482 0.22 -0.8 593,277 + Sama_0482 0.23 -1.8 593,277 + Sama_0482 0.23 +0.2 593,277 + Sama_0482 0.23 -1.1 593,278 - Sama_0482 0.23 -2.1 593,278 - Sama_0482 0.23 -2.4 593,279 + Sama_0482 0.23 -0.6 593,280 - Sama_0482 0.23 -1.7 593,297 + Sama_0482 0.24 -0.3 593,328 - Sama_0482 0.26 -1.6 593,352 + Sama_0482 0.28 -1.9 593,352 + Sama_0482 0.28 -0.6 593,352 + Sama_0482 0.28 -0.6 593,353 - Sama_0482 0.28 -1.5 593,353 - Sama_0482 0.28 -0.5 593,487 + Sama_0482 0.38 -1.0 593,487 + Sama_0482 0.38 -1.0 593,487 + Sama_0482 0.38 -2.2 593,487 + Sama_0482 0.38 -0.9 593,487 + Sama_0482 0.38 +1.5 593,487 + Sama_0482 0.38 +0.0 593,517 + Sama_0482 0.40 -1.2 593,518 - Sama_0482 0.40 -0.8 593,532 + Sama_0482 0.41 -1.2 593,533 - Sama_0482 0.41 -0.5 593,533 - Sama_0482 0.41 -0.5 593,533 - Sama_0482 0.41 -1.6 593,539 + Sama_0482 0.42 -0.1 593,539 + Sama_0482 0.42 -1.1 593,539 + Sama_0482 0.42 -0.8 593,589 + Sama_0482 0.46 -0.9 593,596 - Sama_0482 0.46 -0.9 593,613 + Sama_0482 0.47 -1.2 593,613 + Sama_0482 0.47 -2.8 593,614 - Sama_0482 0.47 -0.6 593,614 - Sama_0482 0.47 -1.1 593,614 - Sama_0482 0.47 -1.0 593,669 - Sama_0482 0.51 -0.5 593,702 + Sama_0482 0.54 +0.3 593,702 + Sama_0482 0.54 -0.3 593,702 + Sama_0482 0.54 -0.1 593,702 + Sama_0482 0.54 -0.1 593,703 - Sama_0482 0.54 -0.9 593,703 - Sama_0482 0.54 -2.2 593,703 - Sama_0482 0.54 -1.1 593,756 + Sama_0482 0.58 +0.2 593,757 - Sama_0482 0.58 -0.2 593,757 - Sama_0482 0.58 -0.8 593,757 - Sama_0482 0.58 -1.1 593,757 - Sama_0482 0.58 -1.3 593,784 + Sama_0482 0.60 -1.1 593,784 + Sama_0482 0.60 -0.1 593,892 + Sama_0482 0.68 -1.5 593,893 - Sama_0482 0.68 -1.6 593,893 - Sama_0482 0.68 -0.1 593,893 - Sama_0482 0.68 +0.9 593,955 + Sama_0482 0.72 -0.9 593,955 + Sama_0482 0.72 -0.1 593,955 + Sama_0482 0.72 +0.4 593,956 - Sama_0482 0.73 -1.5 593,956 - Sama_0482 0.73 -1.1 593,970 + Sama_0482 0.74 -1.4 594,000 - Sama_0482 0.76 -0.8 594,000 - Sama_0482 0.76 +0.0 594,021 + Sama_0482 0.77 -2.0 594,021 + Sama_0482 0.77 -0.8 594,022 - Sama_0482 0.77 -0.1 594,022 - Sama_0482 0.77 -0.4 594,022 - Sama_0482 0.77 +2.3 594,022 - Sama_0482 0.77 -1.6 594,022 - Sama_0482 0.77 -1.1 594,068 - Sama_0482 0.81 +0.4 594,103 + Sama_0482 0.83 -2.1 594,103 + Sama_0482 0.83 -1.0 594,138 + Sama_0482 0.86 -1.4 594,138 + Sama_0482 0.86 +0.5 594,138 + Sama_0482 0.86 -1.7 594,138 + Sama_0482 0.86 -0.5 594,139 - Sama_0482 0.86 -1.9 594,139 - Sama_0482 0.86 -1.6 594,139 - Sama_0482 0.86 -0.1 594,162 + Sama_0482 0.88 -0.4 594,162 + Sama_0482 0.88 -2.7 594,162 + Sama_0482 0.88 -0.5 594,163 - Sama_0482 0.88 -0.9 594,163 - Sama_0482 0.88 -0.6 594,203 + +0.5 594,231 + -1.1 594,231 + -0.4 594,231 + +0.4 594,231 + -0.6 594,231 + +0.0 594,231 + -1.5 594,231 + -0.1 594,232 - -0.1 594,232 - -1.4 594,232 - -1.0 594,232 - -1.2 594,232 - -0.4 594,232 - -1.5 594,293 + -1.2 594,336 + +1.4 594,337 - -0.2 594,337 - -2.4 594,343 - +0.8 594,343 - -0.1 594,371 + -0.6 594,371 + +0.1 594,371 + -0.1 594,383 + -0.5 594,393 + +0.8 594,393 + -0.1 594,393 + +0.8 594,394 - -0.5 594,394 - -0.4 594,394 - +0.0 594,394 - -0.9 594,416 + +0.3 594,417 - +0.5 594,477 - +0.6 594,477 - +1.1 594,522 + +0.3 594,522 + +0.2 594,522 + -0.3 594,522 + -0.3 594,522 + +0.4 594,522 + +0.7 594,523 - +0.7 594,523 - -0.7 594,523 - +0.2 594,538 + Sama_0483 0.11 -1.4 594,547 - Sama_0483 0.12 +1.3 594,583 - Sama_0483 0.16 +1.1 594,583 - Sama_0483 0.16 -0.4 594,602 + Sama_0483 0.19 -0.1 594,602 + Sama_0483 0.19 -0.9 594,602 + Sama_0483 0.19 -0.8 594,603 - Sama_0483 0.19 -0.6 594,603 - Sama_0483 0.19 -0.7 594,603 - Sama_0483 0.19 +0.5 594,603 - Sama_0483 0.19 +0.8 594,616 - Sama_0483 0.20 +1.3 594,720 - Sama_0483 0.32 -1.1 594,752 + Sama_0483 0.36 -0.6 594,752 + Sama_0483 0.36 +1.2 594,781 + Sama_0483 0.39 -0.1 594,781 + Sama_0483 0.39 +0.5 594,781 + Sama_0483 0.39 -0.1 594,782 - Sama_0483 0.39 -1.6 594,782 - Sama_0483 0.39 -0.8 594,782 - Sama_0483 0.39 -0.1 594,782 - Sama_0483 0.39 -0.2 594,782 - Sama_0483 0.39 +0.1 594,782 - Sama_0483 0.39 +2.3 594,782 - Sama_0483 0.39 +1.9 594,782 - Sama_0483 0.39 -0.2 594,782 - Sama_0483 0.39 +0.6 594,784 + Sama_0483 0.39 +0.6 594,794 + Sama_0483 0.41 +1.1 594,805 + Sama_0483 0.42 +0.9 594,806 - Sama_0483 0.42 -1.1 594,809 + Sama_0483 0.42 -1.2 594,810 - Sama_0483 0.42 -0.6 594,810 - Sama_0483 0.42 -0.1 594,810 - Sama_0483 0.42 -1.2 594,842 + Sama_0483 0.46 -0.8 594,843 - Sama_0483 0.46 +0.8 594,914 - Sama_0483 0.54 +0.1 594,914 - Sama_0483 0.54 +0.3 594,971 + Sama_0483 0.61 +2.4 594,971 + Sama_0483 0.61 +0.6 594,974 + Sama_0483 0.61 +0.2 595,004 + Sama_0483 0.64 +0.6 595,004 + Sama_0483 0.64 -0.5 595,004 + Sama_0483 0.64 +2.3 595,005 - Sama_0483 0.65 +0.4 595,005 - Sama_0483 0.65 -0.3 595,005 - Sama_0483 0.65 -0.7 595,005 - Sama_0483 0.65 +0.0 595,006 + Sama_0483 0.65 -0.1 595,006 + Sama_0483 0.65 +0.2 595,007 - Sama_0483 0.65 -0.6 595,007 - Sama_0483 0.65 +0.4 595,042 + Sama_0483 0.69 +0.2 595,042 + Sama_0483 0.69 -0.9 595,042 + Sama_0483 0.69 +0.1 595,043 - Sama_0483 0.69 -0.2 595,061 + Sama_0483 0.71 -0.6 595,079 - Sama_0483 0.73 +1.3 595,079 - Sama_0483 0.73 -0.5 595,112 + Sama_0483 0.77 +0.7 595,113 - Sama_0483 0.77 +0.6 595,113 - Sama_0483 0.77 +1.4 595,137 + Sama_0483 0.80 -0.2 595,220 + Sama_0483 0.89 -1.4 595,220 + Sama_0483 0.89 +0.4 595,221 - Sama_0483 0.89 +0.8 595,222 + Sama_0483 0.89 +0.4 595,222 + Sama_0483 0.89 -1.1 595,302 + -0.7 595,303 - +0.4 595,318 + -0.3 595,318 + +1.1
Or see this region's nucleotide sequence