Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3736 and Shew_3737 are separated by 7 nucleotides Shew_3737 and Shew_3738 overlap by 4 nucleotides Shew_3738 and trkA are separated by 9 nucleotides
Shew_3736: Shew_3736 - peptide deformylase (RefSeq), at 4,449,631 to 4,450,143
_3736
Shew_3737: Shew_3737 - methionyl-tRNA formyltransferase (RefSeq), at 4,450,151 to 4,451,125
_3737
Shew_3738: Shew_3738 - sun protein (RefSeq), at 4,451,122 to 4,452,405
_3738
Shew_3739: trkA - potassium transporter peripheral membrane component (RefSeq), at 4,452,415 to 4,453,824
trkA
Position (kb)
4451
4452
4453 Strain fitness (log2 ratio)
-2
-1
0
1 at 4451.187 kb on + strand at 4451.457 kb on + strand, within Shew_3738 at 4451.465 kb on - strand, within Shew_3738 at 4451.466 kb on + strand, within Shew_3738 at 4451.466 kb on + strand, within Shew_3738 at 4451.472 kb on - strand, within Shew_3738 at 4451.565 kb on + strand, within Shew_3738 at 4451.588 kb on + strand, within Shew_3738 at 4451.734 kb on + strand, within Shew_3738 at 4451.794 kb on + strand, within Shew_3738 at 4451.794 kb on + strand, within Shew_3738 at 4451.802 kb on - strand, within Shew_3738
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,451,187 + -1.0 4,451,457 + Shew_3738 0.26 -0.8 4,451,465 - Shew_3738 0.27 -2.4 4,451,466 + Shew_3738 0.27 -1.1 4,451,466 + Shew_3738 0.27 -1.1 4,451,472 - Shew_3738 0.27 -1.5 4,451,565 + Shew_3738 0.35 +0.3 4,451,588 + Shew_3738 0.36 -1.4 4,451,734 + Shew_3738 0.48 -1.0 4,451,794 + Shew_3738 0.52 -0.2 4,451,794 + Shew_3738 0.52 -0.8 4,451,802 - Shew_3738 0.53 -1.6
Or see this region's nucleotide sequence