Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2568 and Shew_2569 are separated by 318 nucleotides Shew_2569 and Shew_2570 are separated by 111 nucleotides Shew_2570 and Shew_2571 are separated by 89 nucleotides
Shew_2568: Shew_2568 - AMP-dependent synthetase and ligase (RefSeq), at 3,025,644 to 3,027,632
_2568
Shew_2569: Shew_2569 - MerR family transcriptional regulator (RefSeq), at 3,027,951 to 3,028,352
_2569
Shew_2570: Shew_2570 - acyl-CoA dehydrogenase domain-containing protein (RefSeq), at 3,028,464 to 3,029,633
_2570
Shew_2571: Shew_2571 - propionyl-CoA carboxylase (RefSeq), at 3,029,723 to 3,031,330
_2571
Position (kb)
3028
3029
3030 Strain fitness (log2 ratio)
-1
0
1 at 3027.473 kb on - strand at 3028.211 kb on + strand, within Shew_2569 at 3028.520 kb on + strand at 3028.520 kb on + strand at 3028.737 kb on - strand, within Shew_2570 at 3028.761 kb on - strand, within Shew_2570 at 3028.765 kb on + strand, within Shew_2570 at 3028.787 kb on + strand, within Shew_2570 at 3028.861 kb on - strand, within Shew_2570 at 3029.217 kb on + strand, within Shew_2570 at 3029.605 kb on + strand at 3029.772 kb on - strand at 3030.097 kb on + strand, within Shew_2571 at 3030.170 kb on - strand, within Shew_2571 at 3030.279 kb on - strand, within Shew_2571 at 3030.297 kb on + strand, within Shew_2571 at 3030.413 kb on + strand, within Shew_2571 at 3030.616 kb on - strand, within Shew_2571
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,027,473 - +0.7 3,028,211 + Shew_2569 0.65 +0.1 3,028,520 + +0.1 3,028,520 + +0.7 3,028,737 - Shew_2570 0.23 +0.7 3,028,761 - Shew_2570 0.25 +0.5 3,028,765 + Shew_2570 0.26 +0.6 3,028,787 + Shew_2570 0.28 +0.8 3,028,861 - Shew_2570 0.34 +0.4 3,029,217 + Shew_2570 0.64 +0.5 3,029,605 + +0.0 3,029,772 - +1.0 3,030,097 + Shew_2571 0.23 +1.2 3,030,170 - Shew_2571 0.28 +0.8 3,030,279 - Shew_2571 0.35 +0.5 3,030,297 + Shew_2571 0.36 +1.1 3,030,413 + Shew_2571 0.43 +1.3 3,030,616 - Shew_2571 0.56 +1.7
Or see this region's nucleotide sequence