Strain Fitness in Shewanella loihica PV-4 around Shew_2455

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2453 and Shew_2454 are separated by 75 nucleotidesShew_2454 and Shew_2455 are separated by 74 nucleotidesShew_2455 and Shew_2456 are separated by 245 nucleotides Shew_2453: Shew_2453 - hypothetical protein (RefSeq), at 2,883,867 to 2,884,307 _2453 Shew_2454: Shew_2454 - hypothetical protein (RefSeq), at 2,884,383 to 2,884,889 _2454 Shew_2455: Shew_2455 - peptidase M23B (RefSeq), at 2,884,964 to 2,886,220 _2455 Shew_2456: Shew_2456 - SMC domain-containing protein (RefSeq), at 2,886,466 to 2,889,522 _2456 Position (kb) 2884 2885 2886 2887Strain fitness (log2 ratio) -1 0 1at 2884.195 kb on - strand, within Shew_2453at 2885.175 kb on - strand, within Shew_2455at 2885.259 kb on + strand, within Shew_2455at 2885.796 kb on + strand, within Shew_2455at 2886.118 kb on + strandat 2886.137 kb on - strandat 2886.511 kb on - strandat 2886.999 kb on + strand, within Shew_2456at 2887.052 kb on - strand, within Shew_2456

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,884,195 - Shew_2453 0.74 +0.6
2,885,175 - Shew_2455 0.17 +0.7
2,885,259 + Shew_2455 0.23 +0.5
2,885,796 + Shew_2455 0.66 +0.6
2,886,118 + +0.3
2,886,137 - +1.7
2,886,511 - +0.2
2,886,999 + Shew_2456 0.17 +0.6
2,887,052 - Shew_2456 0.19 +0.2

Or see this region's nucleotide sequence