Strain Fitness in Shewanella loihica PV-4 around Shew_2300

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2299 and Shew_2300 are separated by 151 nucleotidesShew_2300 and Shew_2301 are separated by 152 nucleotides Shew_2299: Shew_2299 - DNA topoisomerase III (RefSeq), at 2,692,559 to 2,694,571 _2299 Shew_2300: Shew_2300 - hypothetical protein (RefSeq), at 2,694,723 to 2,694,998 _2300 Shew_2301: Shew_2301 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,695,151 to 2,697,268 _2301 Position (kb) 2694 2695Strain fitness (log2 ratio) -1 0 1at 2694.348 kb on + strand, within Shew_2299at 2694.955 kb on + strand, within Shew_2300at 2695.425 kb on + strand, within Shew_2301at 2695.458 kb on + strand, within Shew_2301at 2695.667 kb on - strand, within Shew_2301at 2695.667 kb on - strand, within Shew_2301at 2695.771 kb on - strand, within Shew_2301

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,694,348 + Shew_2299 0.89 -0.3
2,694,955 + Shew_2300 0.84 +0.6
2,695,425 + Shew_2301 0.13 +0.1
2,695,458 + Shew_2301 0.14 +0.2
2,695,667 - Shew_2301 0.24 +0.6
2,695,667 - Shew_2301 0.24 +0.2
2,695,771 - Shew_2301 0.29 -0.1

Or see this region's nucleotide sequence