Strain Fitness in Shewanella loihica PV-4 around Shew_2099
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,426,796 | - | -0.2 | |||
2,426,890 | + | Shew_2098 | 0.12 | +0.2 | |
2,427,183 | - | Shew_2098 | 0.53 | -1.4 | |
2,427,231 | + | Shew_2098 | 0.60 | +0.3 | |
2,427,663 | - | Shew_2099 | 0.31 | -1.1 | |
2,427,944 | + | Shew_2099 | 0.80 | -3.2 | |
2,427,954 | + | Shew_2099 | 0.82 | -0.1 | |
2,428,137 | - | +0.2 | |||
2,428,645 | + | Shew_2100 | 0.13 | +0.7 | |
2,428,786 | + | Shew_2100 | 0.18 | +0.1 | |
2,428,862 | - | Shew_2100 | 0.20 | +0.4 | |
2,428,928 | - | Shew_2100 | 0.22 | +1.1 |
Or see this region's nucleotide sequence