Strain Fitness in Shewanella loihica PV-4 around Shew_2090

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2089 and Shew_2090 are separated by 3 nucleotidesShew_2090 and thiH are separated by 102 nucleotides Shew_2089: Shew_2089 - SrpA-related protein (RefSeq), at 2,416,453 to 2,417,850 _2089 Shew_2090: Shew_2090 - methyl-accepting chemotaxis protein (RefSeq), at 2,417,854 to 2,418,123 _2090 Shew_2091: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 2,418,226 to 2,419,344 thiH Position (kb) 2417 2418 2419Strain fitness (log2 ratio) -1 0 1at 2416.888 kb on - strand, within Shew_2089at 2417.080 kb on - strand, within Shew_2089at 2417.296 kb on - strand, within Shew_2089at 2418.052 kb on + strand, within Shew_2090at 2419.000 kb on - strand, within thiHat 2419.000 kb on - strand, within thiH

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,416,888 - Shew_2089 0.31 +0.2
2,417,080 - Shew_2089 0.45 +0.3
2,417,296 - Shew_2089 0.60 +0.4
2,418,052 + Shew_2090 0.73 +0.6
2,419,000 - thiH Shew_2091 0.69 -0.7
2,419,000 - thiH Shew_2091 0.69 -0.2

Or see this region's nucleotide sequence