Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2086 and Shew_2087 overlap by 26 nucleotides Shew_2087 and Shew_2088 are separated by 15 nucleotides Shew_2088 and Shew_2089 overlap by 24 nucleotides
Shew_2086: Shew_2086 - hypothetical protein (RefSeq), at 2,412,648 to 2,414,423
_2086
Shew_2087: Shew_2087 - hypothetical protein (RefSeq), at 2,414,398 to 2,415,549
_2087
Shew_2088: Shew_2088 - LysR family transcriptional regulator (RefSeq), at 2,415,565 to 2,416,476
_2088
Shew_2089: Shew_2089 - SrpA-related protein (RefSeq), at 2,416,453 to 2,417,850
_2089
Position (kb)
2414
2415
2416 Strain fitness (log2 ratio)
-2
-1
0
1 at 2414.038 kb on - strand, within Shew_2086 at 2414.162 kb on - strand, within Shew_2086 at 2414.281 kb on - strand at 2414.332 kb on - strand at 2415.041 kb on - strand, within Shew_2087 at 2415.351 kb on - strand, within Shew_2087 at 2415.385 kb on + strand, within Shew_2087 at 2415.492 kb on + strand at 2416.197 kb on - strand, within Shew_2088 at 2416.450 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,414,038 - Shew_2086 0.78 -0.3 2,414,162 - Shew_2086 0.85 -1.2 2,414,281 - -2.2 2,414,332 - -1.1 2,415,041 - Shew_2087 0.56 -0.9 2,415,351 - Shew_2087 0.83 -0.5 2,415,385 + Shew_2087 0.86 -1.5 2,415,492 + -0.0 2,416,197 - Shew_2088 0.69 -0.1 2,416,450 + -0.2
Or see this region's nucleotide sequence