Strain Fitness in Shewanella loihica PV-4 around Shew_1695

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1694 and Shew_1695 are separated by 92 nucleotidesShew_1695 and Shew_1696 are separated by 650 nucleotides Shew_1694: Shew_1694 - hypothetical protein (RefSeq), at 1,948,145 to 1,948,657 _1694 Shew_1695: Shew_1695 - hypothetical protein (RefSeq), at 1,948,750 to 1,949,097 _1695 Shew_1696: Shew_1696 - hypothetical protein (RefSeq), at 1,949,748 to 1,950,644 _1696 Position (kb) 1948 1949 1950Strain fitness (log2 ratio) -1 0 1 2at 1947.864 kb on - strandat 1947.941 kb on + strandat 1948.121 kb on - strandat 1948.198 kb on + strand, within Shew_1694at 1948.206 kb on - strand, within Shew_1694at 1948.251 kb on - strand, within Shew_1694at 1948.256 kb on - strand, within Shew_1694at 1948.285 kb on + strand, within Shew_1694at 1948.293 kb on - strand, within Shew_1694at 1948.387 kb on - strand, within Shew_1694at 1948.434 kb on - strand, within Shew_1694at 1948.544 kb on - strand, within Shew_1694at 1948.722 kb on - strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.724 kb on + strandat 1948.732 kb on - strandat 1948.732 kb on - strandat 1948.732 kb on - strandat 1948.732 kb on - strandat 1948.732 kb on - strandat 1948.732 kb on - strandat 1948.732 kb on - strandat 1948.732 kb on - strandat 1948.732 kb on - strandat 1948.732 kb on - strandat 1948.732 kb on - strandat 1948.732 kb on - strandat 1948.732 kb on - strandat 1948.732 kb on - strandat 1948.787 kb on + strand, within Shew_1695at 1948.795 kb on - strand, within Shew_1695at 1948.795 kb on - strand, within Shew_1695at 1948.795 kb on - strand, within Shew_1695at 1948.795 kb on - strand, within Shew_1695at 1949.031 kb on - strand, within Shew_1695at 1949.093 kb on + strandat 1949.101 kb on + strandat 1949.101 kb on - strandat 1949.101 kb on - strandat 1949.101 kb on + strandat 1949.163 kb on + strandat 1949.166 kb on - strandat 1949.217 kb on + strandat 1949.217 kb on + strandat 1949.230 kb on - strandat 1949.231 kb on - strandat 1949.316 kb on + strandat 1949.324 kb on - strandat 1949.382 kb on - strandat 1949.518 kb on + strandat 1949.583 kb on + strandat 1949.789 kb on + strandat 1949.888 kb on + strand, within Shew_1696at 1949.901 kb on - strand, within Shew_1696

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,947,864 - -1.7
1,947,941 + -0.3
1,948,121 - +0.3
1,948,198 + Shew_1694 0.10 +0.1
1,948,206 - Shew_1694 0.12 -1.0
1,948,251 - Shew_1694 0.21 +0.7
1,948,256 - Shew_1694 0.22 -0.4
1,948,285 + Shew_1694 0.27 +0.8
1,948,293 - Shew_1694 0.29 +0.0
1,948,387 - Shew_1694 0.47 -0.6
1,948,434 - Shew_1694 0.56 +0.6
1,948,544 - Shew_1694 0.78 +0.1
1,948,722 - -0.4
1,948,724 + -0.2
1,948,724 + -0.2
1,948,724 + +0.2
1,948,724 + -1.2
1,948,724 + +0.2
1,948,724 + -0.9
1,948,724 + -0.3
1,948,724 + +0.5
1,948,724 + +2.2
1,948,724 + -0.1
1,948,724 + -0.6
1,948,724 + +1.0
1,948,724 + +0.2
1,948,724 + -0.4
1,948,724 + +0.5
1,948,732 - -0.2
1,948,732 - +0.8
1,948,732 - -0.2
1,948,732 - -0.8
1,948,732 - -0.0
1,948,732 - +0.1
1,948,732 - -0.2
1,948,732 - -0.4
1,948,732 - -0.0
1,948,732 - +0.4
1,948,732 - -0.4
1,948,732 - -0.4
1,948,732 - -0.4
1,948,732 - +0.4
1,948,787 + Shew_1695 0.11 +0.3
1,948,795 - Shew_1695 0.13 -0.4
1,948,795 - Shew_1695 0.13 -0.6
1,948,795 - Shew_1695 0.13 -0.2
1,948,795 - Shew_1695 0.13 -1.0
1,949,031 - Shew_1695 0.81 -0.3
1,949,093 + -0.1
1,949,101 + +0.2
1,949,101 - +0.9
1,949,101 - +0.0
1,949,101 + +0.4
1,949,163 + -0.4
1,949,166 - +0.8
1,949,217 + +2.1
1,949,217 + +1.1
1,949,230 - -0.2
1,949,231 - +0.4
1,949,316 + +0.3
1,949,324 - -1.3
1,949,382 - -0.6
1,949,518 + -1.4
1,949,583 + -1.0
1,949,789 + -0.8
1,949,888 + Shew_1696 0.16 +0.2
1,949,901 - Shew_1696 0.17 +0.9

Or see this region's nucleotide sequence