Strain Fitness in Shewanella loihica PV-4 around Shew_1488

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1486 and Shew_1487 overlap by 4 nucleotidesShew_1487 and Shew_1488 are separated by 254 nucleotidesShew_1488 and Shew_1489 are separated by 118 nucleotidesShew_1489 and Shew_1490 are separated by 74 nucleotides Shew_1486: Shew_1486 - hypothetical protein (RefSeq), at 1,710,668 to 1,711,156 _1486 Shew_1487: Shew_1487 - hypothetical protein (RefSeq), at 1,711,153 to 1,711,686 _1487 Shew_1488: Shew_1488 - FAD linked oxidase domain-containing protein (RefSeq), at 1,711,941 to 1,713,326 _1488 Shew_1489: Shew_1489 - hypothetical protein (RefSeq), at 1,713,445 to 1,714,035 _1489 Shew_1490: Shew_1490 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 1,714,110 to 1,714,694 _1490 Position (kb) 1711 1712 1713 1714Strain fitness (log2 ratio) -1 0 1at 1711.001 kb on - strand, within Shew_1486at 1711.130 kb on - strandat 1711.306 kb on - strand, within Shew_1487at 1711.427 kb on + strand, within Shew_1487at 1711.524 kb on - strand, within Shew_1487at 1711.643 kb on + strandat 1711.858 kb on + strandat 1712.163 kb on + strand, within Shew_1488at 1712.283 kb on - strand, within Shew_1488at 1712.533 kb on - strand, within Shew_1488at 1713.505 kb on - strand, within Shew_1489at 1713.690 kb on + strand, within Shew_1489at 1713.707 kb on + strand, within Shew_1489at 1713.733 kb on - strand, within Shew_1489at 1713.863 kb on - strand, within Shew_1489at 1713.938 kb on - strand, within Shew_1489at 1713.974 kb on + strand, within Shew_1489

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,711,001 - Shew_1486 0.68 -0.4
1,711,130 - +0.2
1,711,306 - Shew_1487 0.29 -1.0
1,711,427 + Shew_1487 0.51 -0.2
1,711,524 - Shew_1487 0.69 +0.1
1,711,643 + +0.7
1,711,858 + +0.6
1,712,163 + Shew_1488 0.16 +0.6
1,712,283 - Shew_1488 0.25 -0.1
1,712,533 - Shew_1488 0.43 +1.6
1,713,505 - Shew_1489 0.10 +0.1
1,713,690 + Shew_1489 0.41 -0.1
1,713,707 + Shew_1489 0.44 +1.2
1,713,733 - Shew_1489 0.49 -0.2
1,713,863 - Shew_1489 0.71 +0.3
1,713,938 - Shew_1489 0.83 -0.1
1,713,974 + Shew_1489 0.90 +0.1

Or see this region's nucleotide sequence