Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1486 and Shew_1487 overlap by 4 nucleotides Shew_1487 and Shew_1488 are separated by 254 nucleotides Shew_1488 and Shew_1489 are separated by 118 nucleotides Shew_1489 and Shew_1490 are separated by 74 nucleotides
Shew_1486: Shew_1486 - hypothetical protein (RefSeq), at 1,710,668 to 1,711,156
_1486
Shew_1487: Shew_1487 - hypothetical protein (RefSeq), at 1,711,153 to 1,711,686
_1487
Shew_1488: Shew_1488 - FAD linked oxidase domain-containing protein (RefSeq), at 1,711,941 to 1,713,326
_1488
Shew_1489: Shew_1489 - hypothetical protein (RefSeq), at 1,713,445 to 1,714,035
_1489
Shew_1490: Shew_1490 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 1,714,110 to 1,714,694
_1490
Position (kb)
1711
1712
1713
1714 Strain fitness (log2 ratio)
-1
0
1 at 1711.001 kb on - strand, within Shew_1486 at 1711.130 kb on - strand at 1711.306 kb on - strand, within Shew_1487 at 1711.427 kb on + strand, within Shew_1487 at 1711.524 kb on - strand, within Shew_1487 at 1711.643 kb on + strand at 1711.858 kb on + strand at 1712.163 kb on + strand, within Shew_1488 at 1712.283 kb on - strand, within Shew_1488 at 1712.533 kb on - strand, within Shew_1488 at 1713.505 kb on - strand, within Shew_1489 at 1713.690 kb on + strand, within Shew_1489 at 1713.707 kb on + strand, within Shew_1489 at 1713.733 kb on - strand, within Shew_1489 at 1713.863 kb on - strand, within Shew_1489 at 1713.938 kb on - strand, within Shew_1489 at 1713.974 kb on + strand, within Shew_1489
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,711,001 - Shew_1486 0.68 -0.4 1,711,130 - +0.2 1,711,306 - Shew_1487 0.29 -1.0 1,711,427 + Shew_1487 0.51 -0.2 1,711,524 - Shew_1487 0.69 +0.1 1,711,643 + +0.7 1,711,858 + +0.6 1,712,163 + Shew_1488 0.16 +0.6 1,712,283 - Shew_1488 0.25 -0.1 1,712,533 - Shew_1488 0.43 +1.6 1,713,505 - Shew_1489 0.10 +0.1 1,713,690 + Shew_1489 0.41 -0.1 1,713,707 + Shew_1489 0.44 +1.2 1,713,733 - Shew_1489 0.49 -0.2 1,713,863 - Shew_1489 0.71 +0.3 1,713,938 - Shew_1489 0.83 -0.1 1,713,974 + Shew_1489 0.90 +0.1
Or see this region's nucleotide sequence