Strain Fitness in Shewanella loihica PV-4 around Shew_1454

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1452 and Shew_1453 are separated by 65 nucleotidesShew_1453 and Shew_1454 are separated by 114 nucleotidesShew_1454 and Shew_1455 are separated by 33 nucleotidesShew_1455 and Shew_1456 are separated by 55 nucleotides Shew_1452: Shew_1452 - AraC family transcriptional regulator (RefSeq), at 1,673,444 to 1,674,955 _1452 Shew_1453: Shew_1453 - methylated-DNA--protein-cysteinemethyltransferase (RefSeq), at 1,675,021 to 1,675,608 _1453 Shew_1454: Shew_1454 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 1,675,723 to 1,677,048 _1454 Shew_1455: Shew_1455 - dual specificity protein phosphatase (RefSeq), at 1,677,082 to 1,677,552 _1455 Shew_1456: Shew_1456 - phospholipase D/transphosphatidylase (RefSeq), at 1,677,608 to 1,679,176 _1456 Position (kb) 1675 1676 1677 1678Strain fitness (log2 ratio) -1 0 1at 1674.795 kb on - strand, within Shew_1452at 1674.945 kb on - strandat 1675.256 kb on - strand, within Shew_1453at 1675.321 kb on - strand, within Shew_1453at 1675.414 kb on - strand, within Shew_1453at 1675.761 kb on - strandat 1676.246 kb on - strand, within Shew_1454at 1676.384 kb on + strand, within Shew_1454at 1676.410 kb on - strand, within Shew_1454at 1677.426 kb on - strand, within Shew_1455at 1677.547 kb on + strandat 1677.808 kb on + strand, within Shew_1456at 1677.816 kb on - strand, within Shew_1456

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,674,795 - Shew_1452 0.89 +1.5
1,674,945 - +0.2
1,675,256 - Shew_1453 0.40 +0.4
1,675,321 - Shew_1453 0.51 +0.2
1,675,414 - Shew_1453 0.67 +0.9
1,675,761 - -0.4
1,676,246 - Shew_1454 0.39 +0.7
1,676,384 + Shew_1454 0.50 +0.4
1,676,410 - Shew_1454 0.52 +0.6
1,677,426 - Shew_1455 0.73 +1.1
1,677,547 + +0.4
1,677,808 + Shew_1456 0.13 +0.5
1,677,816 - Shew_1456 0.13 +1.2

Or see this region's nucleotide sequence