Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1452 and Shew_1453 are separated by 65 nucleotides Shew_1453 and Shew_1454 are separated by 114 nucleotides Shew_1454 and Shew_1455 are separated by 33 nucleotides Shew_1455 and Shew_1456 are separated by 55 nucleotides
Shew_1452: Shew_1452 - AraC family transcriptional regulator (RefSeq), at 1,673,444 to 1,674,955
_1452
Shew_1453: Shew_1453 - methylated-DNA--protein-cysteinemethyltransferase (RefSeq), at 1,675,021 to 1,675,608
_1453
Shew_1454: Shew_1454 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 1,675,723 to 1,677,048
_1454
Shew_1455: Shew_1455 - dual specificity protein phosphatase (RefSeq), at 1,677,082 to 1,677,552
_1455
Shew_1456: Shew_1456 - phospholipase D/transphosphatidylase (RefSeq), at 1,677,608 to 1,679,176
_1456
Position (kb)
1675
1676
1677
1678 Strain fitness (log2 ratio)
-1
0
1 at 1674.795 kb on - strand, within Shew_1452 at 1674.945 kb on - strand at 1675.256 kb on - strand, within Shew_1453 at 1675.321 kb on - strand, within Shew_1453 at 1675.414 kb on - strand, within Shew_1453 at 1675.761 kb on - strand at 1676.246 kb on - strand, within Shew_1454 at 1676.384 kb on + strand, within Shew_1454 at 1676.410 kb on - strand, within Shew_1454 at 1677.426 kb on - strand, within Shew_1455 at 1677.547 kb on + strand at 1677.808 kb on + strand, within Shew_1456 at 1677.816 kb on - strand, within Shew_1456
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,674,795 - Shew_1452 0.89 +1.5 1,674,945 - +0.2 1,675,256 - Shew_1453 0.40 +0.4 1,675,321 - Shew_1453 0.51 +0.2 1,675,414 - Shew_1453 0.67 +0.9 1,675,761 - -0.4 1,676,246 - Shew_1454 0.39 +0.7 1,676,384 + Shew_1454 0.50 +0.4 1,676,410 - Shew_1454 0.52 +0.6 1,677,426 - Shew_1455 0.73 +1.1 1,677,547 + +0.4 1,677,808 + Shew_1456 0.13 +0.5 1,677,816 - Shew_1456 0.13 +1.2
Or see this region's nucleotide sequence