Strain Fitness in Shewanella loihica PV-4 around Shew_1295
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
1,496,197 | - | -0.1 | |||
1,496,314 | + | -0.0 | |||
1,496,578 | - | Shew_1295 | 0.46 | +0.9 | |
1,496,784 | - | Shew_1295 | 0.85 | +0.3 | |
1,496,791 | - | Shew_1295 | 0.86 | +1.4 | |
1,497,011 | + | +0.0 | |||
1,497,101 | - | +1.2 | |||
1,497,131 | + | +0.5 | |||
1,497,139 | - | +0.4 | |||
1,497,161 | + | -0.1 | |||
1,497,174 | + | -0.0 | |||
1,497,203 | - | -1.1 | |||
1,497,294 | - | xseA | Shew_1296 | 0.15 | +0.4 |
1,497,315 | - | xseA | Shew_1296 | 0.16 | -0.5 |
1,497,388 | - | xseA | Shew_1296 | 0.22 | +0.2 |
1,497,428 | + | xseA | Shew_1296 | 0.25 | -1.2 |
1,497,718 | - | xseA | Shew_1296 | 0.47 | +0.3 |
1,497,755 | - | xseA | Shew_1296 | 0.50 | +2.5 |
1,497,762 | + | xseA | Shew_1296 | 0.50 | -0.1 |
Or see this region's nucleotide sequence