Strain Fitness in Shewanella loihica PV-4 around Shew_0992

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0991 and Shew_0992 are separated by 8 nucleotidesShew_0992 and Shew_0993 overlap by 4 nucleotides Shew_0991: Shew_0991 - resolvase domain-containing protein (RefSeq), at 1,147,126 to 1,147,743 _0991 Shew_0992: Shew_0992 - BsuBIPstI restriction endonuclease domain-containing protein (RefSeq), at 1,147,752 to 1,148,849 _0992 Shew_0993: Shew_0993 - Eco57I restriction endonuclease (RefSeq), at 1,148,846 to 1,150,633 _0993 Position (kb) 1147 1148 1149Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1146.909 kb on + strandat 1147.017 kb on + strandat 1147.730 kb on + strandat 1147.834 kb on - strandat 1147.849 kb on - strandat 1148.535 kb on - strand, within Shew_0992at 1149.077 kb on + strand, within Shew_0993at 1149.419 kb on - strand, within Shew_0993

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,146,909 + +0.0
1,147,017 + -0.3
1,147,730 + -1.1
1,147,834 - -0.1
1,147,849 - +0.0
1,148,535 - Shew_0992 0.71 +0.7
1,149,077 + Shew_0993 0.13 -0.1
1,149,419 - Shew_0993 0.32 -4.5

Or see this region's nucleotide sequence