Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0781 and Shew_0782 are separated by 220 nucleotides Shew_0782 and Shew_0783 are separated by 134 nucleotides Shew_0783 and Shew_0784 are separated by 93 nucleotides
Shew_0781: Shew_0781 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 892,722 to 896,573
_0781
Shew_0782: Shew_0782 - DNA-binding transcriptional regulator AsnC (RefSeq), at 896,794 to 897,255
_0782
Shew_0783: Shew_0783 - pseudouridylate synthase (RefSeq), at 897,390 to 898,067
_0783
Shew_0784: Shew_0784 - hypothetical protein (RefSeq), at 898,161 to 898,448
_0784
Position (kb) 896
897
898 Strain fitness (log2 ratio) -1
0
1 at 895.804 kb on + strand, within Shew_0781 at 895.853 kb on + strand, within Shew_0781 at 896.086 kb on - strand, within Shew_0781 at 896.151 kb on - strand, within Shew_0781 at 896.168 kb on - strand, within Shew_0781 at 896.219 kb on - strand at 896.504 kb on + strand at 896.800 kb on - strand at 896.973 kb on + strand, within Shew_0782 at 897.066 kb on + strand, within Shew_0782 at 897.073 kb on - strand, within Shew_0782 at 897.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 895,804 + Shew_0781 0.80 -0.1 895,853 + Shew_0781 0.81 +0.1 896,086 - Shew_0781 0.87 +0.1 896,151 - Shew_0781 0.89 -0.3 896,168 - Shew_0781 0.89 +0.0 896,219 - -0.7 896,504 + -0.9 896,800 - -1.0 896,973 + Shew_0782 0.39 +0.9 897,066 + Shew_0782 0.59 +0.9 897,073 - Shew_0782 0.60 +0.2 897,398 - +0.1
Or see this region's nucleotide sequence