Strain Fitness in Shewanella loihica PV-4 around Shew_0761

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0760 and Shew_0761 overlap by 8 nucleotidesShew_0761 and Shew_0762 are separated by 69 nucleotides Shew_0760: Shew_0760 - response regulator receiver protein (RefSeq), at 861,579 to 862,400 _0760 Shew_0761: Shew_0761 - hypothetical protein (RefSeq), at 862,393 to 862,914 _0761 Shew_0762: Shew_0762 - hypothetical protein (RefSeq), at 862,984 to 864,405 _0762 Position (kb) 862 863Strain fitness (log2 ratio) -1 0 1at 861.545 kb on + strandat 862.000 kb on + strand, within Shew_0760at 862.008 kb on - strand, within Shew_0760at 862.108 kb on + strand, within Shew_0760at 862.321 kb on + strandat 862.508 kb on + strand, within Shew_0761at 862.508 kb on + strand, within Shew_0761at 862.508 kb on + strand, within Shew_0761at 862.516 kb on - strand, within Shew_0761at 862.805 kb on - strand, within Shew_0761at 862.878 kb on + strandat 862.898 kb on + strandat 862.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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861,545 + -0.1
862,000 + Shew_0760 0.51 -0.0
862,008 - Shew_0760 0.52 +0.2
862,108 + Shew_0760 0.64 +0.3
862,321 + +1.1
862,508 + Shew_0761 0.22 -0.3
862,508 + Shew_0761 0.22 -0.8
862,508 + Shew_0761 0.22 -0.2
862,516 - Shew_0761 0.24 -0.2
862,805 - Shew_0761 0.79 -0.1
862,878 + +0.1
862,898 + -0.4
862,923 + -0.1

Or see this region's nucleotide sequence