Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0732 and Shew_0733 are separated by 30 nucleotides Shew_0733 and Shew_0734 are separated by 237 nucleotides Shew_0734 and Shew_0735 are separated by 20 nucleotides
Shew_0732: Shew_0732 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 833,279 to 834,619
_0732
Shew_0733: Shew_0733 - hypothetical protein (RefSeq), at 834,650 to 835,405
_0733
Shew_0734: Shew_0734 - Fe-S metabolism associated SufE (RefSeq), at 835,643 to 836,095
_0734
Shew_0735: Shew_0735 - SufS subfamily cysteine desulfurase (RefSeq), at 836,116 to 837,327
_0735
Position (kb) 834
835
836 Strain fitness (log2 ratio) -1
0
1 at 833.776 kb on + strand, within Shew_0732 at 833.894 kb on - strand, within Shew_0732 at 834.052 kb on + strand, within Shew_0732 at 834.209 kb on - strand, within Shew_0732 at 834.209 kb on - strand, within Shew_0732 at 834.727 kb on - strand, within Shew_0733 at 834.786 kb on + strand, within Shew_0733 at 834.786 kb on + strand, within Shew_0733 at 834.794 kb on - strand, within Shew_0733 at 834.794 kb on - strand, within Shew_0733 at 835.380 kb on + strand at 835.542 kb on + strand at 835.550 kb on - strand at 836.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 833,776 + Shew_0732 0.37 -1.3 833,894 - Shew_0732 0.46 +0.3 834,052 + Shew_0732 0.58 +0.2 834,209 - Shew_0732 0.69 -1.6 834,209 - Shew_0732 0.69 -0.6 834,727 - Shew_0733 0.10 +0.8 834,786 + Shew_0733 0.18 +1.7 834,786 + Shew_0733 0.18 +0.5 834,794 - Shew_0733 0.19 +0.1 834,794 - Shew_0733 0.19 +0.4 835,380 + -0.3 835,542 + +0.3 835,550 - -0.1 836,082 - +0.8
Or see this region's nucleotide sequence