Strain Fitness in Shewanella loihica PV-4 around Shew_0733

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0732 and Shew_0733 are separated by 30 nucleotidesShew_0733 and Shew_0734 are separated by 237 nucleotidesShew_0734 and Shew_0735 are separated by 20 nucleotides Shew_0732: Shew_0732 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 833,279 to 834,619 _0732 Shew_0733: Shew_0733 - hypothetical protein (RefSeq), at 834,650 to 835,405 _0733 Shew_0734: Shew_0734 - Fe-S metabolism associated SufE (RefSeq), at 835,643 to 836,095 _0734 Shew_0735: Shew_0735 - SufS subfamily cysteine desulfurase (RefSeq), at 836,116 to 837,327 _0735 Position (kb) 834 835 836Strain fitness (log2 ratio) -1 0 1at 833.776 kb on + strand, within Shew_0732at 833.894 kb on - strand, within Shew_0732at 834.052 kb on + strand, within Shew_0732at 834.209 kb on - strand, within Shew_0732at 834.209 kb on - strand, within Shew_0732at 834.727 kb on - strand, within Shew_0733at 834.786 kb on + strand, within Shew_0733at 834.786 kb on + strand, within Shew_0733at 834.794 kb on - strand, within Shew_0733at 834.794 kb on - strand, within Shew_0733at 835.380 kb on + strandat 835.542 kb on + strandat 835.550 kb on - strandat 836.082 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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833,776 + Shew_0732 0.37 -1.3
833,894 - Shew_0732 0.46 +0.3
834,052 + Shew_0732 0.58 +0.2
834,209 - Shew_0732 0.69 -1.6
834,209 - Shew_0732 0.69 -0.6
834,727 - Shew_0733 0.10 +0.8
834,786 + Shew_0733 0.18 +1.7
834,786 + Shew_0733 0.18 +0.5
834,794 - Shew_0733 0.19 +0.1
834,794 - Shew_0733 0.19 +0.4
835,380 + -0.3
835,542 + +0.3
835,550 - -0.1
836,082 - +0.8

Or see this region's nucleotide sequence