Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0585 and Shew_0586 are separated by 443 nucleotides Shew_0586 and Shew_0587 are separated by 336 nucleotides
Shew_0585: Shew_0585 - cAMP-regulatory protein (RefSeq), at 662,616 to 663,251
_0585
Shew_0586: Shew_0586 - TPR repeat-containing protein (RefSeq), at 663,695 to 664,474
_0586
Shew_0587: Shew_0587 - phosphoribulokinase (RefSeq), at 664,811 to 665,698
_0587
Position (kb) 663
664
665 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 663.121 kb on + strand, within Shew_0585 at 663.121 kb on + strand, within Shew_0585 at 663.121 kb on + strand, within Shew_0585 at 663.121 kb on + strand, within Shew_0585 at 663.121 kb on + strand, within Shew_0585 at 663.129 kb on - strand, within Shew_0585 at 663.129 kb on - strand, within Shew_0585 at 663.226 kb on + strand at 663.226 kb on + strand at 663.226 kb on + strand at 663.226 kb on + strand at 663.485 kb on + strand at 663.495 kb on + strand at 663.522 kb on - strand at 663.551 kb on + strand at 663.593 kb on - strand at 663.625 kb on - strand at 663.625 kb on - strand at 663.627 kb on + strand at 663.627 kb on + strand at 663.932 kb on - strand, within Shew_0586 at 664.125 kb on + strand, within Shew_0586 at 664.238 kb on - strand, within Shew_0586 at 664.477 kb on - strand at 664.877 kb on + strand at 664.915 kb on + strand, within Shew_0587 at 665.028 kb on - strand, within Shew_0587 at 665.048 kb on + strand, within Shew_0587 at 665.053 kb on + strand, within Shew_0587 at 665.053 kb on + strand, within Shew_0587 at 665.053 kb on + strand, within Shew_0587 at 665.053 kb on + strand, within Shew_0587 at 665.061 kb on - strand, within Shew_0587 at 665.061 kb on - strand, within Shew_0587 at 665.068 kb on + strand, within Shew_0587 at 665.142 kb on - strand, within Shew_0587 at 665.142 kb on - strand, within Shew_0587 at 665.266 kb on + strand, within Shew_0587 at 665.308 kb on - strand, within Shew_0587 at 665.407 kb on + strand, within Shew_0587 at 665.423 kb on + strand, within Shew_0587 at 665.431 kb on - strand, within Shew_0587
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 663,121 + Shew_0585 0.79 +1.8 663,121 + Shew_0585 0.79 -0.4 663,121 + Shew_0585 0.79 -1.8 663,121 + Shew_0585 0.79 +3.1 663,121 + Shew_0585 0.79 +0.6 663,129 - Shew_0585 0.81 +0.3 663,129 - Shew_0585 0.81 +1.1 663,226 + -0.8 663,226 + +2.6 663,226 + +1.0 663,226 + +0.8 663,485 + +0.4 663,495 + -1.1 663,522 - +0.0 663,551 + +0.4 663,593 - -0.1 663,625 - +0.8 663,625 - -0.1 663,627 + -3.2 663,627 + +0.3 663,932 - Shew_0586 0.30 +0.3 664,125 + Shew_0586 0.55 +0.9 664,238 - Shew_0586 0.70 +0.6 664,477 - +0.2 664,877 + -0.6 664,915 + Shew_0587 0.12 +0.5 665,028 - Shew_0587 0.24 +3.6 665,048 + Shew_0587 0.27 +0.1 665,053 + Shew_0587 0.27 -0.0 665,053 + Shew_0587 0.27 -0.5 665,053 + Shew_0587 0.27 +0.2 665,053 + Shew_0587 0.27 +0.4 665,061 - Shew_0587 0.28 -0.0 665,061 - Shew_0587 0.28 +0.1 665,068 + Shew_0587 0.29 -0.4 665,142 - Shew_0587 0.37 +0.5 665,142 - Shew_0587 0.37 +0.7 665,266 + Shew_0587 0.51 +0.1 665,308 - Shew_0587 0.56 +0.1 665,407 + Shew_0587 0.67 +0.4 665,423 + Shew_0587 0.69 +0.3 665,431 - Shew_0587 0.70 -0.1
Or see this region's nucleotide sequence