Strain Fitness in Shewanella loihica PV-4 around Shew_0516

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0515 and Shew_0516 are separated by 64 nucleotidesShew_0516 and Shew_0517 are separated by 512 nucleotides Shew_0515: Shew_0515 - hypothetical protein (RefSeq), at 583,939 to 585,651 _0515 Shew_0516: Shew_0516 - cytochrome c family protein (RefSeq), at 585,716 to 586,045 _0516 Shew_0517: Shew_0517 - putative plasmid transfer protein (RefSeq), at 586,558 to 587,754 _0517 Position (kb) 585 586 587Strain fitness (log2 ratio) -1 0 1at 584.779 kb on + strand, within Shew_0515at 584.835 kb on + strand, within Shew_0515at 585.062 kb on - strand, within Shew_0515at 585.095 kb on + strand, within Shew_0515at 585.095 kb on + strand, within Shew_0515at 585.095 kb on + strand, within Shew_0515at 585.603 kb on - strandat 585.951 kb on + strand, within Shew_0516at 585.951 kb on + strand, within Shew_0516at 585.975 kb on + strand, within Shew_0516at 586.367 kb on + strandat 586.966 kb on + strand, within Shew_0517

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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584,779 + Shew_0515 0.49 -1.1
584,835 + Shew_0515 0.52 -0.2
585,062 - Shew_0515 0.66 +0.3
585,095 + Shew_0515 0.67 +0.4
585,095 + Shew_0515 0.67 +1.2
585,095 + Shew_0515 0.67 +0.3
585,603 - -0.3
585,951 + Shew_0516 0.71 +1.6
585,951 + Shew_0516 0.71 +0.4
585,975 + Shew_0516 0.78 -0.2
586,367 + -0.1
586,966 + Shew_0517 0.34 +0.0

Or see this region's nucleotide sequence