Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0461 and Shew_0462 are separated by 312 nucleotides Shew_0462 and Shew_0463 are separated by 118 nucleotides Shew_0463 and Shew_0464 are separated by 52 nucleotides Shew_0464 and Shew_0465 are separated by 160 nucleotides
Shew_0461: Shew_0461 - hypothetical protein (RefSeq), at 518,656 to 519,195
_0461
Shew_0462: Shew_0462 - hypothetical protein (RefSeq), at 519,508 to 519,813
_0462
Shew_0463: Shew_0463 - hypothetical protein (RefSeq), at 519,932 to 520,315
_0463
Shew_0464: Shew_0464 - hypothetical protein (RefSeq), at 520,368 to 520,751
_0464
Shew_0465: Shew_0465 - hypothetical protein (RefSeq), at 520,912 to 521,322
_0465
Position (kb) 519
520
521 Strain fitness (log2 ratio) -1
0
1 at 519.049 kb on + strand, within Shew_0461 at 519.157 kb on - strand at 519.454 kb on + strand at 519.640 kb on - strand, within Shew_0462 at 520.076 kb on + strand, within Shew_0463 at 520.084 kb on - strand, within Shew_0463 at 520.113 kb on + strand, within Shew_0463 at 520.248 kb on + strand, within Shew_0463 at 520.339 kb on + strand at 520.396 kb on + strand at 520.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 519,049 + Shew_0461 0.73 +0.5 519,157 - +0.9 519,454 + -0.4 519,640 - Shew_0462 0.43 -0.3 520,076 + Shew_0463 0.38 +0.1 520,084 - Shew_0463 0.40 +0.5 520,113 + Shew_0463 0.47 +0.5 520,248 + Shew_0463 0.82 +1.6 520,339 + -0.3 520,396 + +0.1 520,404 - +0.2
Or see this region's nucleotide sequence