Strain Fitness in Shewanella loihica PV-4 around Shew_0220

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0218 and Shew_0219 are separated by 211 nucleotidesShew_0219 and Shew_0220 are separated by 2 nucleotidesShew_0220 and Shew_0221 are separated by 5 nucleotides Shew_0218: Shew_0218 - hypothetical protein (RefSeq), at 233,092 to 233,436 _0218 Shew_0219: Shew_0219 - ribulose-phosphate 3-epimerase (RefSeq), at 233,648 to 234,322 _0219 Shew_0220: Shew_0220 - phosphoglycolate phosphatase (RefSeq), at 234,325 to 235,020 _0220 Shew_0221: Shew_0221 - tryptophanyl-tRNA synthetase (RefSeq), at 235,026 to 236,024 _0221 Position (kb) 234 235 236Strain fitness (log2 ratio) -1 0 1at 233.370 kb on - strand, within Shew_0218at 233.425 kb on - strandat 234.312 kb on - strandat 234.312 kb on - strandat 234.411 kb on + strand, within Shew_0220at 234.545 kb on - strand, within Shew_0220at 234.744 kb on + strand, within Shew_0220at 234.798 kb on + strand, within Shew_0220at 234.806 kb on - strand, within Shew_0220

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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233,370 - Shew_0218 0.81 -0.9
233,425 - -0.1
234,312 - +0.9
234,312 - +0.7
234,411 + Shew_0220 0.12 +0.4
234,545 - Shew_0220 0.32 +0.6
234,744 + Shew_0220 0.60 +0.9
234,798 + Shew_0220 0.68 +1.4
234,806 - Shew_0220 0.69 +1.0

Or see this region's nucleotide sequence