Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4198 and Dshi_4199 are separated by 65 nucleotides Dshi_4199 and Dshi_4200 are separated by 145 nucleotides Dshi_4200 and Dshi_4201 overlap by 4 nucleotides Dshi_4201 and Dshi_4202 overlap by 4 nucleotides
Dshi_4198: Dshi_4198 - transcriptional regulator, LysR family (RefSeq), at 44,976 to 45,887
_4198
Dshi_4199: Dshi_4199 - transcriptional regulator, TetR family (RefSeq), at 45,953 to 46,597
_4199
Dshi_4200: Dshi_4200 - Carbon-monoxide dehydrogenase (acceptor) (RefSeq), at 46,743 to 47,576
_4200
Dshi_4201: Dshi_4201 - (2Fe-2S)-binding domain protein (RefSeq), at 47,573 to 48,073
_4201
Dshi_4202: Dshi_4202 - Carbon-monoxide dehydrogenase (acceptor) (RefSeq), at 48,070 to 50,451
_4202
Position (kb) 46
47
48 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 45.820 kb on + strand at 45.882 kb on + strand at 46.188 kb on - strand, within Dshi_4199 at 46.299 kb on - strand, within Dshi_4199 at 46.322 kb on + strand, within Dshi_4199 at 46.771 kb on + strand at 46.982 kb on + strand, within Dshi_4200 at 47.297 kb on + strand, within Dshi_4200 at 47.316 kb on - strand, within Dshi_4200 at 47.331 kb on + strand, within Dshi_4200 at 47.589 kb on - strand at 47.630 kb on + strand, within Dshi_4201 at 47.638 kb on + strand, within Dshi_4201 at 47.638 kb on - strand, within Dshi_4201 at 47.651 kb on + strand at 47.690 kb on - strand, within Dshi_4201 at 47.816 kb on + strand, within Dshi_4201 at 48.159 kb on - strand at 48.231 kb on - strand at 48.328 kb on + strand, within Dshi_4202 at 48.348 kb on - strand, within Dshi_4202
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 45,820 + +1.3 45,882 + +1.9 46,188 - Dshi_4199 0.36 +0.3 46,299 - Dshi_4199 0.54 +2.3 46,322 + Dshi_4199 0.57 +3.6 46,771 + +3.3 46,982 + Dshi_4200 0.29 +2.3 47,297 + Dshi_4200 0.66 +2.7 47,316 - Dshi_4200 0.69 +0.3 47,331 + Dshi_4200 0.71 -0.7 47,589 - +1.2 47,630 + Dshi_4201 0.11 -0.5 47,638 + Dshi_4201 0.13 +0.7 47,638 - Dshi_4201 0.13 -0.3 47,651 + +2.3 47,690 - Dshi_4201 0.23 +3.9 47,816 + Dshi_4201 0.49 +1.7 48,159 - +0.3 48,231 - +1.0 48,328 + Dshi_4202 0.11 -0.7 48,348 - Dshi_4202 0.12 +2.3
Or see this region's nucleotide sequence