Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4148 and Dshi_4149 are separated by 265 nucleotides Dshi_4149 and Dshi_4150 overlap by 4 nucleotides
Dshi_4148: Dshi_4148 - ABC-2 type transporter (RefSeq), at 80,815 to 81,660
_4148
Dshi_4149: Dshi_4149 - transferase hexapeptide repeat containing protein (RefSeq), at 81,926 to 82,657
_4149
Dshi_4150: Dshi_4150 - hypothetical protein (RefSeq), at 82,654 to 83,457
_4150
Position (kb)
81
82
83 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 80.969 kb on - strand, within Dshi_4148 at 81.116 kb on - strand, within Dshi_4148 at 81.174 kb on + strand, within Dshi_4148 at 81.182 kb on - strand, within Dshi_4148 at 81.190 kb on - strand, within Dshi_4148 at 81.243 kb on + strand, within Dshi_4148 at 81.322 kb on + strand, within Dshi_4148 at 81.477 kb on + strand, within Dshi_4148 at 81.623 kb on - strand at 81.641 kb on + strand at 81.641 kb on + strand at 81.709 kb on - strand at 81.740 kb on - strand at 81.819 kb on - strand at 81.949 kb on - strand at 81.982 kb on + strand at 82.021 kb on - strand, within Dshi_4149 at 82.034 kb on + strand, within Dshi_4149 at 82.099 kb on + strand, within Dshi_4149 at 82.108 kb on - strand, within Dshi_4149 at 82.164 kb on - strand, within Dshi_4149 at 82.193 kb on + strand, within Dshi_4149 at 82.201 kb on - strand, within Dshi_4149 at 82.306 kb on - strand, within Dshi_4149 at 82.308 kb on - strand, within Dshi_4149 at 82.315 kb on + strand, within Dshi_4149 at 82.417 kb on + strand, within Dshi_4149 at 82.520 kb on + strand, within Dshi_4149 at 82.574 kb on + strand, within Dshi_4149 at 82.582 kb on - strand, within Dshi_4149 at 82.582 kb on - strand, within Dshi_4149 at 82.769 kb on - strand, within Dshi_4150 at 82.793 kb on - strand, within Dshi_4150 at 82.887 kb on - strand, within Dshi_4150 at 82.928 kb on + strand, within Dshi_4150 at 83.015 kb on + strand, within Dshi_4150 at 83.464 kb on - strand at 83.466 kb on + strand at 83.506 kb on - strand at 83.506 kb on - strand at 83.527 kb on - strand at 83.587 kb on - strand at 83.587 kb on - strand at 83.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 80,969 - Dshi_4148 0.18 -1.6 81,116 - Dshi_4148 0.36 -0.3 81,174 + Dshi_4148 0.42 -1.2 81,182 - Dshi_4148 0.43 +0.7 81,190 - Dshi_4148 0.44 -2.0 81,243 + Dshi_4148 0.51 -0.3 81,322 + Dshi_4148 0.60 -0.5 81,477 + Dshi_4148 0.78 +0.7 81,623 - -1.7 81,641 + +0.3 81,641 + -0.3 81,709 - +2.3 81,740 - -0.3 81,819 - +0.4 81,949 - +2.3 81,982 + +1.9 82,021 - Dshi_4149 0.13 -1.9 82,034 + Dshi_4149 0.15 +1.6 82,099 + Dshi_4149 0.24 -1.2 82,108 - Dshi_4149 0.25 -1.2 82,164 - Dshi_4149 0.33 -1.0 82,193 + Dshi_4149 0.36 +1.0 82,201 - Dshi_4149 0.38 +1.8 82,306 - Dshi_4149 0.52 -1.2 82,308 - Dshi_4149 0.52 -1.9 82,315 + Dshi_4149 0.53 +1.8 82,417 + Dshi_4149 0.67 +1.3 82,520 + Dshi_4149 0.81 +0.2 82,574 + Dshi_4149 0.89 +3.9 82,582 - Dshi_4149 0.90 -0.3 82,582 - Dshi_4149 0.90 +1.4 82,769 - Dshi_4150 0.14 +0.7 82,793 - Dshi_4150 0.17 -1.9 82,887 - Dshi_4150 0.29 -0.3 82,928 + Dshi_4150 0.34 -1.3 83,015 + Dshi_4150 0.45 +0.7 83,464 - -0.0 83,466 + +0.3 83,506 - +1.5 83,506 - +1.4 83,527 - +4.3 83,587 - -0.3 83,587 - +0.9 83,640 - -2.8
Or see this region's nucleotide sequence