Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4142 and Dshi_4143 are separated by 9 nucleotides Dshi_4143 and Dshi_4144 are separated by 117 nucleotides Dshi_4144 and Dshi_4145 are separated by 6 nucleotides
Dshi_4142: Dshi_4142 - NAD-dependent epimerase/dehydratase (RefSeq), at 74,668 to 75,609
_4142
Dshi_4143: Dshi_4143 - glycosyl transferase family 2 (RefSeq), at 75,619 to 76,494
_4143
Dshi_4144: Dshi_4144 - transferase hexapeptide repeat containing protein (RefSeq), at 76,612 to 77,184
_4144
Dshi_4145: Dshi_4145 - glycosyl transferase family 2 (RefSeq), at 77,191 to 78,195
_4145
Position (kb) 75
76
77 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 74.646 kb on + strand at 74.654 kb on - strand at 74.693 kb on - strand at 74.710 kb on + strand at 74.715 kb on + strand at 74.748 kb on + strand at 74.753 kb on + strand at 74.756 kb on - strand at 74.756 kb on - strand at 74.768 kb on + strand, within Dshi_4142 at 74.791 kb on - strand, within Dshi_4142 at 74.795 kb on - strand, within Dshi_4142 at 74.809 kb on + strand, within Dshi_4142 at 74.943 kb on - strand, within Dshi_4142 at 74.957 kb on + strand, within Dshi_4142 at 74.999 kb on - strand, within Dshi_4142 at 75.193 kb on - strand, within Dshi_4142 at 75.270 kb on - strand, within Dshi_4142 at 75.294 kb on + strand, within Dshi_4142 at 75.358 kb on + strand, within Dshi_4142 at 75.358 kb on - strand, within Dshi_4142 at 75.358 kb on - strand, within Dshi_4142 at 75.677 kb on + strand at 75.697 kb on + strand at 75.716 kb on + strand, within Dshi_4143 at 75.764 kb on + strand, within Dshi_4143 at 75.837 kb on + strand, within Dshi_4143 at 75.862 kb on + strand, within Dshi_4143 at 75.910 kb on - strand, within Dshi_4143 at 76.002 kb on + strand, within Dshi_4143 at 76.021 kb on + strand, within Dshi_4143 at 76.099 kb on + strand, within Dshi_4143 at 76.110 kb on + strand, within Dshi_4143 at 76.203 kb on + strand, within Dshi_4143 at 76.235 kb on - strand, within Dshi_4143 at 76.306 kb on + strand, within Dshi_4143 at 76.318 kb on - strand, within Dshi_4143 at 76.362 kb on + strand, within Dshi_4143 at 76.648 kb on - strand at 76.648 kb on - strand at 76.661 kb on - strand at 76.751 kb on - strand, within Dshi_4144 at 76.825 kb on + strand, within Dshi_4144 at 76.951 kb on - strand, within Dshi_4144 at 76.979 kb on - strand, within Dshi_4144 at 76.981 kb on + strand, within Dshi_4144 at 77.045 kb on + strand, within Dshi_4144 at 77.120 kb on - strand, within Dshi_4144 at 77.138 kb on + strand at 77.309 kb on - strand, within Dshi_4145 at 77.314 kb on - strand, within Dshi_4145 at 77.359 kb on - strand, within Dshi_4145 at 77.373 kb on - strand, within Dshi_4145 at 77.476 kb on + strand, within Dshi_4145 at 77.486 kb on + strand, within Dshi_4145
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 74,646 + +4.3 74,654 - +1.3 74,693 - +2.3 74,710 + -1.3 74,715 + -1.7 74,748 + +2.3 74,753 + +2.3 74,756 - -1.4 74,756 - +1.3 74,768 + Dshi_4142 0.11 -0.3 74,791 - Dshi_4142 0.13 -0.7 74,795 - Dshi_4142 0.13 -1.6 74,809 + Dshi_4142 0.15 -1.0 74,943 - Dshi_4142 0.29 -0.9 74,957 + Dshi_4142 0.31 -3.1 74,999 - Dshi_4142 0.35 -0.3 75,193 - Dshi_4142 0.56 -1.8 75,270 - Dshi_4142 0.64 +0.3 75,294 + Dshi_4142 0.66 -2.0 75,358 + Dshi_4142 0.73 -1.3 75,358 - Dshi_4142 0.73 -0.9 75,358 - Dshi_4142 0.73 -1.3 75,677 + +2.3 75,697 + -2.9 75,716 + Dshi_4143 0.11 -0.7 75,764 + Dshi_4143 0.17 +1.5 75,837 + Dshi_4143 0.25 -0.2 75,862 + Dshi_4143 0.28 -0.1 75,910 - Dshi_4143 0.33 -2.3 76,002 + Dshi_4143 0.44 +1.3 76,021 + Dshi_4143 0.46 -0.6 76,099 + Dshi_4143 0.55 -3.8 76,110 + Dshi_4143 0.56 -2.4 76,203 + Dshi_4143 0.67 -2.2 76,235 - Dshi_4143 0.70 -1.9 76,306 + Dshi_4143 0.78 -1.2 76,318 - Dshi_4143 0.80 -0.3 76,362 + Dshi_4143 0.85 -0.2 76,648 - -1.1 76,648 - +0.1 76,661 - +2.1 76,751 - Dshi_4144 0.24 +0.3 76,825 + Dshi_4144 0.37 -0.9 76,951 - Dshi_4144 0.59 +1.5 76,979 - Dshi_4144 0.64 +2.0 76,981 + Dshi_4144 0.64 +1.3 77,045 + Dshi_4144 0.76 +0.7 77,120 - Dshi_4144 0.89 -0.4 77,138 + +2.3 77,309 - Dshi_4145 0.12 -1.3 77,314 - Dshi_4145 0.12 -0.0 77,359 - Dshi_4145 0.17 -0.0 77,373 - Dshi_4145 0.18 +0.7 77,476 + Dshi_4145 0.28 +1.3 77,486 + Dshi_4145 0.29 -1.3
Or see this region's nucleotide sequence