Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3994 and Dshi_3995 are separated by 691 nucleotides Dshi_3995 and Dshi_3996 overlap by 11 nucleotides Dshi_3996 and Dshi_3997 overlap by 74 nucleotides
Dshi_3994: Dshi_3994 - hypothetical protein (RefSeq), at 55,973 to 56,902
_3994
Dshi_3995: Dshi_3995 - protein of unknown function DUF159 (RefSeq), at 57,594 to 58,274
_3995
Dshi_3996: Dshi_3996 - hypothetical protein (RefSeq), at 58,264 to 58,851
_3996
Dshi_3997: Dshi_3997 - hypothetical protein (RefSeq), at 58,778 to 60,277
_3997
Position (kb)
57
58
59 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 56.598 kb on - strand, within Dshi_3994 at 56.739 kb on + strand, within Dshi_3994 at 56.771 kb on - strand, within Dshi_3994 at 56.899 kb on - strand at 56.902 kb on + strand at 56.910 kb on - strand at 56.915 kb on + strand at 57.045 kb on + strand at 57.058 kb on - strand at 57.073 kb on + strand at 57.206 kb on - strand at 57.394 kb on + strand at 57.396 kb on + strand at 57.588 kb on + strand at 57.591 kb on - strand at 57.596 kb on - strand at 57.614 kb on + strand at 57.630 kb on - strand at 57.652 kb on - strand at 57.680 kb on + strand, within Dshi_3995 at 57.725 kb on - strand, within Dshi_3995 at 57.810 kb on - strand, within Dshi_3995 at 57.897 kb on - strand, within Dshi_3995 at 57.968 kb on + strand, within Dshi_3995 at 58.034 kb on - strand, within Dshi_3995 at 58.034 kb on - strand, within Dshi_3995 at 58.091 kb on - strand, within Dshi_3995 at 58.131 kb on + strand, within Dshi_3995 at 58.132 kb on - strand, within Dshi_3995 at 58.162 kb on - strand, within Dshi_3995 at 58.162 kb on - strand, within Dshi_3995 at 58.162 kb on - strand, within Dshi_3995 at 58.338 kb on - strand, within Dshi_3996 at 58.356 kb on + strand, within Dshi_3996 at 58.356 kb on + strand, within Dshi_3996 at 58.395 kb on - strand, within Dshi_3996 at 58.470 kb on - strand, within Dshi_3996 at 58.475 kb on - strand, within Dshi_3996 at 58.494 kb on + strand, within Dshi_3996 at 58.494 kb on + strand, within Dshi_3996 at 58.502 kb on - strand, within Dshi_3996 at 58.502 kb on - strand, within Dshi_3996 at 58.537 kb on - strand, within Dshi_3996 at 58.635 kb on - strand, within Dshi_3996 at 58.650 kb on - strand, within Dshi_3996 at 58.669 kb on + strand, within Dshi_3996 at 58.847 kb on + strand at 58.892 kb on + strand at 58.966 kb on + strand, within Dshi_3997 at 58.971 kb on + strand, within Dshi_3997 at 58.971 kb on + strand, within Dshi_3997 at 59.074 kb on - strand, within Dshi_3997 at 59.224 kb on - strand, within Dshi_3997
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 56,598 - Dshi_3994 0.67 +0.3 56,739 + Dshi_3994 0.82 +1.4 56,771 - Dshi_3994 0.86 -0.1 56,899 - +0.9 56,902 + +0.4 56,910 - -3.8 56,915 + +0.6 57,045 + -0.9 57,058 - +1.4 57,073 + -3.4 57,206 - -3.4 57,394 + +1.0 57,396 + +0.3 57,588 + +0.3 57,591 - -1.6 57,596 - +0.7 57,614 + +0.5 57,630 - -0.6 57,652 - -1.9 57,680 + Dshi_3995 0.13 -1.2 57,725 - Dshi_3995 0.19 +1.0 57,810 - Dshi_3995 0.32 -1.6 57,897 - Dshi_3995 0.44 +1.4 57,968 + Dshi_3995 0.55 +0.1 58,034 - Dshi_3995 0.65 -0.3 58,034 - Dshi_3995 0.65 -0.0 58,091 - Dshi_3995 0.73 -3.4 58,131 + Dshi_3995 0.79 +2.7 58,132 - Dshi_3995 0.79 -1.3 58,162 - Dshi_3995 0.83 -1.1 58,162 - Dshi_3995 0.83 +0.5 58,162 - Dshi_3995 0.83 +0.1 58,338 - Dshi_3996 0.13 -2.1 58,356 + Dshi_3996 0.16 -0.3 58,356 + Dshi_3996 0.16 +1.4 58,395 - Dshi_3996 0.22 +2.6 58,470 - Dshi_3996 0.35 +1.4 58,475 - Dshi_3996 0.36 +0.5 58,494 + Dshi_3996 0.39 +5.6 58,494 + Dshi_3996 0.39 -0.6 58,502 - Dshi_3996 0.40 +1.4 58,502 - Dshi_3996 0.40 -0.4 58,537 - Dshi_3996 0.46 -0.2 58,635 - Dshi_3996 0.63 +1.1 58,650 - Dshi_3996 0.66 +2.4 58,669 + Dshi_3996 0.69 +1.4 58,847 + +0.1 58,892 + +1.3 58,966 + Dshi_3997 0.13 -0.6 58,971 + Dshi_3997 0.13 +1.5 58,971 + Dshi_3997 0.13 +0.8 59,074 - Dshi_3997 0.20 +0.8 59,224 - Dshi_3997 0.30 -0.1
Or see this region's nucleotide sequence