Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3819 and Dshi_3820 overlap by 1 nucleotides Dshi_3820 and Dshi_3821 are separated by 1 nucleotides Dshi_3821 and Dshi_3822 are separated by 12 nucleotides
Dshi_3819: Dshi_3819 - phenylacetate-CoA oxygenase, PaaH subunit (RefSeq), at 27,210 to 27,542
_3819
Dshi_3820: Dshi_3820 - phenylacetate-CoA oxygenase, PaaI subunit (RefSeq), at 27,542 to 28,309
_3820
Dshi_3821: Dshi_3821 - phenylacetate-CoA oxygenase, PaaJ subunit (RefSeq), at 28,311 to 28,769
_3821
Dshi_3822: Dshi_3822 - phenylacetate-CoA oxygenase/reductase, PaaK subunit (RefSeq), at 28,782 to 29,852
_3822
Position (kb) 28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 27.370 kb on + strand, within Dshi_3819 at 27.598 kb on - strand at 27.600 kb on + strand at 27.670 kb on + strand, within Dshi_3820 at 27.678 kb on - strand, within Dshi_3820 at 27.731 kb on + strand, within Dshi_3820 at 27.737 kb on + strand, within Dshi_3820 at 27.814 kb on + strand, within Dshi_3820 at 27.892 kb on + strand, within Dshi_3820 at 27.955 kb on - strand, within Dshi_3820 at 27.966 kb on - strand, within Dshi_3820 at 28.055 kb on - strand, within Dshi_3820 at 28.163 kb on + strand, within Dshi_3820 at 28.213 kb on - strand, within Dshi_3820 at 28.318 kb on - strand at 28.501 kb on - strand, within Dshi_3821 at 28.513 kb on + strand, within Dshi_3821 at 28.701 kb on + strand, within Dshi_3821 at 28.743 kb on - strand at 28.845 kb on - strand at 28.934 kb on + strand, within Dshi_3822 at 28.939 kb on + strand, within Dshi_3822 at 29.005 kb on - strand, within Dshi_3822 at 29.031 kb on - strand, within Dshi_3822 at 29.088 kb on - strand, within Dshi_3822 at 29.091 kb on + strand, within Dshi_3822 at 29.171 kb on - strand, within Dshi_3822 at 29.210 kb on + strand, within Dshi_3822 at 29.210 kb on + strand, within Dshi_3822 at 29.218 kb on - strand, within Dshi_3822 at 29.218 kb on - strand, within Dshi_3822 at 29.236 kb on + strand, within Dshi_3822 at 29.420 kb on - strand, within Dshi_3822 at 29.565 kb on + strand, within Dshi_3822 at 29.617 kb on + strand, within Dshi_3822 at 29.666 kb on - strand, within Dshi_3822 at 29.710 kb on - strand, within Dshi_3822 at 29.739 kb on + strand, within Dshi_3822
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 27,370 + Dshi_3819 0.48 +0.1 27,598 - -2.1 27,600 + +1.9 27,670 + Dshi_3820 0.17 +1.9 27,678 - Dshi_3820 0.18 -0.9 27,731 + Dshi_3820 0.25 +1.9 27,737 + Dshi_3820 0.25 -1.8 27,814 + Dshi_3820 0.35 -2.8 27,892 + Dshi_3820 0.46 -0.1 27,955 - Dshi_3820 0.54 -1.8 27,966 - Dshi_3820 0.55 +0.4 28,055 - Dshi_3820 0.67 +0.2 28,163 + Dshi_3820 0.81 -0.1 28,213 - Dshi_3820 0.87 +1.9 28,318 - -0.5 28,501 - Dshi_3821 0.41 -3.7 28,513 + Dshi_3821 0.44 -2.4 28,701 + Dshi_3821 0.85 +2.0 28,743 - -1.3 28,845 - +1.9 28,934 + Dshi_3822 0.14 -1.9 28,939 + Dshi_3822 0.15 +0.9 29,005 - Dshi_3822 0.21 -3.2 29,031 - Dshi_3822 0.23 -1.1 29,088 - Dshi_3822 0.29 -0.7 29,091 + Dshi_3822 0.29 -2.6 29,171 - Dshi_3822 0.36 +1.1 29,210 + Dshi_3822 0.40 +1.9 29,210 + Dshi_3822 0.40 -0.4 29,218 - Dshi_3822 0.41 -0.1 29,218 - Dshi_3822 0.41 +1.9 29,236 + Dshi_3822 0.42 +0.2 29,420 - Dshi_3822 0.60 +4.2 29,565 + Dshi_3822 0.73 +1.1 29,617 + Dshi_3822 0.78 -1.7 29,666 - Dshi_3822 0.83 -0.7 29,710 - Dshi_3822 0.87 -3.0 29,739 + Dshi_3822 0.89 +0.4
Or see this region's nucleotide sequence