Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3796 and Dshi_3797 overlap by 4 nucleotides Dshi_3797 and Dshi_3798 overlap by 4 nucleotides Dshi_3798 and Dshi_3799 are separated by 125 nucleotides Dshi_3799 and Dshi_3800 are separated by 4 nucleotides
Dshi_3796: Dshi_3796 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 4,738 to 5,739
_3796
Dshi_3797: Dshi_3797 - Asp/Glu racemase (RefSeq), at 5,736 to 6,419
_3797
Dshi_3798: Dshi_3798 - NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (RefSeq), at 6,416 to 6,958
_3798
Dshi_3799: Dshi_3799 - HupE/UreJ protein (RefSeq), at 7,084 to 7,680
_3799
Dshi_3800: Dshi_3800 - hypothetical protein (RefSeq), at 7,685 to 8,299
_3800
Position (kb) 6
7 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5.458 kb on - strand, within Dshi_3796 at 5.607 kb on + strand, within Dshi_3796 at 5.769 kb on - strand at 5.772 kb on + strand at 5.803 kb on - strand at 5.853 kb on - strand at 5.921 kb on + strand, within Dshi_3797 at 5.931 kb on + strand, within Dshi_3797 at 5.939 kb on - strand, within Dshi_3797 at 5.944 kb on + strand, within Dshi_3797 at 5.968 kb on + strand, within Dshi_3797 at 6.091 kb on - strand, within Dshi_3797 at 6.269 kb on - strand, within Dshi_3797 at 6.458 kb on + strand at 6.560 kb on + strand, within Dshi_3798 at 6.680 kb on - strand, within Dshi_3798 at 6.761 kb on - strand, within Dshi_3798 at 6.909 kb on - strand at 6.914 kb on - strand at 6.965 kb on + strand at 7.195 kb on + strand, within Dshi_3799 at 7.251 kb on + strand, within Dshi_3799 at 7.393 kb on + strand, within Dshi_3799 at 7.633 kb on - strand at 7.690 kb on - strand at 7.874 kb on - strand, within Dshi_3800
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 5,458 - Dshi_3796 0.72 -0.6 5,607 + Dshi_3796 0.87 -0.1 5,769 - +2.9 5,772 + -1.1 5,803 - +1.9 5,853 - +0.9 5,921 + Dshi_3797 0.27 -1.6 5,931 + Dshi_3797 0.29 +0.1 5,939 - Dshi_3797 0.30 +0.9 5,944 + Dshi_3797 0.30 -2.0 5,968 + Dshi_3797 0.34 +0.9 6,091 - Dshi_3797 0.52 +0.9 6,269 - Dshi_3797 0.78 -1.0 6,458 + +0.0 6,560 + Dshi_3798 0.27 +0.3 6,680 - Dshi_3798 0.49 +1.9 6,761 - Dshi_3798 0.64 +1.1 6,909 - -1.7 6,914 - -1.8 6,965 + -0.7 7,195 + Dshi_3799 0.19 -0.2 7,251 + Dshi_3799 0.28 -0.9 7,393 + Dshi_3799 0.52 +2.6 7,633 - +0.3 7,690 - -0.9 7,874 - Dshi_3800 0.31 +1.9
Or see this region's nucleotide sequence