Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3716

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3715 and Dshi_3716 are separated by 127 nucleotidesDshi_3716 and Dshi_3717 are separated by 38 nucleotides Dshi_3715: Dshi_3715 - transcriptional regulator, LysR family (RefSeq), at 119,636 to 120,550 _3715 Dshi_3716: Dshi_3716 - UbiD family decarboxylase (RefSeq), at 120,678 to 122,087 _3716 Dshi_3717: Dshi_3717 - aldehyde dehydrogenase (RefSeq), at 122,126 to 123,583 _3717 Position (kb) 120 121 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 119.681 kb on - strandat 119.705 kb on - strandat 119.717 kb on + strandat 119.778 kb on + strand, within Dshi_3715at 119.778 kb on + strand, within Dshi_3715at 119.792 kb on - strand, within Dshi_3715at 119.792 kb on - strand, within Dshi_3715at 119.812 kb on + strand, within Dshi_3715at 119.858 kb on + strand, within Dshi_3715at 119.883 kb on - strand, within Dshi_3715at 119.903 kb on + strand, within Dshi_3715at 119.906 kb on - strand, within Dshi_3715at 119.906 kb on - strand, within Dshi_3715at 119.939 kb on - strand, within Dshi_3715at 119.953 kb on + strand, within Dshi_3715at 119.953 kb on + strand, within Dshi_3715at 119.953 kb on + strand, within Dshi_3715at 119.961 kb on - strand, within Dshi_3715at 119.961 kb on - strand, within Dshi_3715at 119.961 kb on - strand, within Dshi_3715at 119.961 kb on - strand, within Dshi_3715at 119.961 kb on - strand, within Dshi_3715at 119.961 kb on - strand, within Dshi_3715at 120.118 kb on - strand, within Dshi_3715at 120.163 kb on + strand, within Dshi_3715at 120.182 kb on - strand, within Dshi_3715at 120.266 kb on + strand, within Dshi_3715at 120.308 kb on - strand, within Dshi_3715at 120.377 kb on + strand, within Dshi_3715at 120.385 kb on - strand, within Dshi_3715at 120.391 kb on - strand, within Dshi_3715at 120.397 kb on + strand, within Dshi_3715at 120.397 kb on - strand, within Dshi_3715at 120.412 kb on - strand, within Dshi_3715at 120.415 kb on + strand, within Dshi_3715at 120.471 kb on + strandat 120.487 kb on + strandat 120.487 kb on + strandat 120.489 kb on + strandat 120.497 kb on - strandat 120.518 kb on + strandat 120.518 kb on - strandat 120.555 kb on - strandat 120.617 kb on + strandat 120.649 kb on - strandat 120.721 kb on - strandat 120.723 kb on - strandat 120.829 kb on - strand, within Dshi_3716at 120.840 kb on + strand, within Dshi_3716at 120.848 kb on - strand, within Dshi_3716at 120.883 kb on + strand, within Dshi_3716at 120.886 kb on - strand, within Dshi_3716at 120.891 kb on - strand, within Dshi_3716at 120.923 kb on - strand, within Dshi_3716at 120.947 kb on + strand, within Dshi_3716at 120.995 kb on + strand, within Dshi_3716at 120.995 kb on + strand, within Dshi_3716at 121.012 kb on + strand, within Dshi_3716at 121.020 kb on - strand, within Dshi_3716at 121.044 kb on - strand, within Dshi_3716at 121.044 kb on - strand, within Dshi_3716at 121.090 kb on - strand, within Dshi_3716at 121.137 kb on + strand, within Dshi_3716at 121.143 kb on - strand, within Dshi_3716at 121.148 kb on - strand, within Dshi_3716at 121.162 kb on + strand, within Dshi_3716at 121.162 kb on + strand, within Dshi_3716at 121.162 kb on + strand, within Dshi_3716at 121.164 kb on + strand, within Dshi_3716at 121.170 kb on - strand, within Dshi_3716at 121.194 kb on - strand, within Dshi_3716at 121.254 kb on + strand, within Dshi_3716at 121.262 kb on - strand, within Dshi_3716at 121.369 kb on + strand, within Dshi_3716at 121.393 kb on + strand, within Dshi_3716at 121.403 kb on + strand, within Dshi_3716at 121.411 kb on - strand, within Dshi_3716at 121.411 kb on - strand, within Dshi_3716at 121.447 kb on + strand, within Dshi_3716at 121.447 kb on + strand, within Dshi_3716at 121.463 kb on + strand, within Dshi_3716at 121.527 kb on + strand, within Dshi_3716at 121.535 kb on - strand, within Dshi_3716at 121.537 kb on - strand, within Dshi_3716at 121.562 kb on + strand, within Dshi_3716at 121.570 kb on - strand, within Dshi_3716at 121.570 kb on - strand, within Dshi_3716at 121.593 kb on - strand, within Dshi_3716at 121.649 kb on - strand, within Dshi_3716at 121.681 kb on + strand, within Dshi_3716at 121.682 kb on - strand, within Dshi_3716at 121.726 kb on - strand, within Dshi_3716at 121.746 kb on + strand, within Dshi_3716at 121.776 kb on + strand, within Dshi_3716at 121.853 kb on + strand, within Dshi_3716at 121.862 kb on + strand, within Dshi_3716at 121.862 kb on + strand, within Dshi_3716at 121.870 kb on - strand, within Dshi_3716at 121.870 kb on - strand, within Dshi_3716at 121.870 kb on - strand, within Dshi_3716at 121.896 kb on + strand, within Dshi_3716at 121.906 kb on + strand, within Dshi_3716at 121.912 kb on + strand, within Dshi_3716at 121.914 kb on - strand, within Dshi_3716at 121.944 kb on + strand, within Dshi_3716at 121.958 kb on + strandat 121.958 kb on + strandat 122.050 kb on + strandat 122.071 kb on + strandat 122.110 kb on + strandat 122.117 kb on - strandat 122.133 kb on + strandat 122.174 kb on - strandat 122.180 kb on - strandat 122.225 kb on - strandat 122.233 kb on + strandat 122.233 kb on + strandat 122.233 kb on + strandat 122.241 kb on - strandat 122.252 kb on + strandat 122.252 kb on + strandat 122.255 kb on - strandat 122.257 kb on + strandat 122.257 kb on + strandat 122.295 kb on + strand, within Dshi_3717at 122.320 kb on - strand, within Dshi_3717at 122.339 kb on + strand, within Dshi_3717at 122.344 kb on + strand, within Dshi_3717at 122.352 kb on - strand, within Dshi_3717at 122.367 kb on - strand, within Dshi_3717at 122.399 kb on - strand, within Dshi_3717at 122.469 kb on + strand, within Dshi_3717at 122.469 kb on + strand, within Dshi_3717at 122.474 kb on + strand, within Dshi_3717at 122.474 kb on + strand, within Dshi_3717at 122.474 kb on + strand, within Dshi_3717at 122.474 kb on + strand, within Dshi_3717at 122.474 kb on + strand, within Dshi_3717at 122.482 kb on - strand, within Dshi_3717at 122.482 kb on - strand, within Dshi_3717at 122.594 kb on + strand, within Dshi_3717at 122.679 kb on - strand, within Dshi_3717at 122.683 kb on + strand, within Dshi_3717at 122.698 kb on + strand, within Dshi_3717at 122.918 kb on + strand, within Dshi_3717at 122.972 kb on + strand, within Dshi_3717at 122.974 kb on + strand, within Dshi_3717at 122.982 kb on - strand, within Dshi_3717at 123.049 kb on + strand, within Dshi_3717at 123.067 kb on - strand, within Dshi_3717

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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119,681 - +0.2
119,705 - +0.4
119,717 + -0.9
119,778 + Dshi_3715 0.16 -0.4
119,778 + Dshi_3715 0.16 +1.4
119,792 - Dshi_3715 0.17 +1.3
119,792 - Dshi_3715 0.17 -1.9
119,812 + Dshi_3715 0.19 +0.0
119,858 + Dshi_3715 0.24 +0.5
119,883 - Dshi_3715 0.27 -0.2
119,903 + Dshi_3715 0.29 -0.8
119,906 - Dshi_3715 0.30 -1.4
119,906 - Dshi_3715 0.30 +1.4
119,939 - Dshi_3715 0.33 -1.8
119,953 + Dshi_3715 0.35 +1.2
119,953 + Dshi_3715 0.35 -0.1
119,953 + Dshi_3715 0.35 +2.8
119,961 - Dshi_3715 0.36 -1.4
119,961 - Dshi_3715 0.36 -0.6
119,961 - Dshi_3715 0.36 -0.6
119,961 - Dshi_3715 0.36 -3.0
119,961 - Dshi_3715 0.36 +1.0
119,961 - Dshi_3715 0.36 -0.6
120,118 - Dshi_3715 0.53 -0.7
120,163 + Dshi_3715 0.58 -1.8
120,182 - Dshi_3715 0.60 -1.0
120,266 + Dshi_3715 0.69 +0.6
120,308 - Dshi_3715 0.73 -3.4
120,377 + Dshi_3715 0.81 +0.4
120,385 - Dshi_3715 0.82 +1.0
120,391 - Dshi_3715 0.83 -1.7
120,397 + Dshi_3715 0.83 +0.6
120,397 - Dshi_3715 0.83 -2.3
120,412 - Dshi_3715 0.85 -0.3
120,415 + Dshi_3715 0.85 +1.0
120,471 + -2.1
120,487 + +0.1
120,487 + -1.0
120,489 + +1.0
120,497 - +1.1
120,518 + +0.3
120,518 - +0.4
120,555 - +0.5
120,617 + -0.2
120,649 - +0.7
120,721 - +0.6
120,723 - -0.7
120,829 - Dshi_3716 0.11 +0.4
120,840 + Dshi_3716 0.11 +1.8
120,848 - Dshi_3716 0.12 +1.8
120,883 + Dshi_3716 0.15 +0.4
120,886 - Dshi_3716 0.15 +0.0
120,891 - Dshi_3716 0.15 +0.3
120,923 - Dshi_3716 0.17 +0.6
120,947 + Dshi_3716 0.19 -1.6
120,995 + Dshi_3716 0.22 -3.6
120,995 + Dshi_3716 0.22 -0.3
121,012 + Dshi_3716 0.24 +1.0
121,020 - Dshi_3716 0.24 +0.9
121,044 - Dshi_3716 0.26 -2.4
121,044 - Dshi_3716 0.26 -3.2
121,090 - Dshi_3716 0.29 -2.0
121,137 + Dshi_3716 0.33 -2.2
121,143 - Dshi_3716 0.33 +0.7
121,148 - Dshi_3716 0.33 +1.0
121,162 + Dshi_3716 0.34 +0.8
121,162 + Dshi_3716 0.34 -0.6
121,162 + Dshi_3716 0.34 +1.0
121,164 + Dshi_3716 0.34 -1.6
121,170 - Dshi_3716 0.35 -1.3
121,194 - Dshi_3716 0.37 +2.7
121,254 + Dshi_3716 0.41 -2.2
121,262 - Dshi_3716 0.41 -1.6
121,369 + Dshi_3716 0.49 +0.6
121,393 + Dshi_3716 0.51 +2.0
121,403 + Dshi_3716 0.51 -0.6
121,411 - Dshi_3716 0.52 -0.5
121,411 - Dshi_3716 0.52 +3.6
121,447 + Dshi_3716 0.55 +1.5
121,447 + Dshi_3716 0.55 -0.4
121,463 + Dshi_3716 0.56 -0.9
121,527 + Dshi_3716 0.60 -0.4
121,535 - Dshi_3716 0.61 +0.1
121,537 - Dshi_3716 0.61 -2.6
121,562 + Dshi_3716 0.63 +2.3
121,570 - Dshi_3716 0.63 +0.2
121,570 - Dshi_3716 0.63 +0.2
121,593 - Dshi_3716 0.65 -1.3
121,649 - Dshi_3716 0.69 +0.1
121,681 + Dshi_3716 0.71 +1.8
121,682 - Dshi_3716 0.71 +2.0
121,726 - Dshi_3716 0.74 -2.9
121,746 + Dshi_3716 0.76 +0.6
121,776 + Dshi_3716 0.78 +2.3
121,853 + Dshi_3716 0.83 +0.3
121,862 + Dshi_3716 0.84 +4.3
121,862 + Dshi_3716 0.84 +0.8
121,870 - Dshi_3716 0.85 -1.0
121,870 - Dshi_3716 0.85 -0.8
121,870 - Dshi_3716 0.85 +0.1
121,896 + Dshi_3716 0.86 +3.1
121,906 + Dshi_3716 0.87 -2.7
121,912 + Dshi_3716 0.88 +1.0
121,914 - Dshi_3716 0.88 +1.0
121,944 + Dshi_3716 0.90 +1.3
121,958 + +0.8
121,958 + +1.4
122,050 + +0.8
122,071 + +1.0
122,110 + +4.0
122,117 - +2.4
122,133 + +3.6
122,174 - +1.2
122,180 - +0.6
122,225 - +0.2
122,233 + -0.2
122,233 + +2.1
122,233 + -0.1
122,241 - -2.3
122,252 + +2.2
122,252 + +1.2
122,255 - +2.3
122,257 + +0.3
122,257 + +0.4
122,295 + Dshi_3717 0.12 +0.9
122,320 - Dshi_3717 0.13 +0.8
122,339 + Dshi_3717 0.15 +0.7
122,344 + Dshi_3717 0.15 +2.4
122,352 - Dshi_3717 0.16 +2.4
122,367 - Dshi_3717 0.17 +1.0
122,399 - Dshi_3717 0.19 -0.3
122,469 + Dshi_3717 0.24 +2.6
122,469 + Dshi_3717 0.24 +0.2
122,474 + Dshi_3717 0.24 +2.3
122,474 + Dshi_3717 0.24 -0.8
122,474 + Dshi_3717 0.24 -0.1
122,474 + Dshi_3717 0.24 +1.4
122,474 + Dshi_3717 0.24 +3.2
122,482 - Dshi_3717 0.24 +0.5
122,482 - Dshi_3717 0.24 -0.5
122,594 + Dshi_3717 0.32 -2.6
122,679 - Dshi_3717 0.38 +1.0
122,683 + Dshi_3717 0.38 -0.6
122,698 + Dshi_3717 0.39 -1.4
122,918 + Dshi_3717 0.54 +0.1
122,972 + Dshi_3717 0.58 -0.0
122,974 + Dshi_3717 0.58 -1.8
122,982 - Dshi_3717 0.59 +0.6
123,049 + Dshi_3717 0.63 +0.9
123,067 - Dshi_3717 0.65 +1.7

Or see this region's nucleotide sequence