Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3715

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3713 and Dshi_3714 overlap by 20 nucleotidesDshi_3714 and Dshi_3715 are separated by 116 nucleotidesDshi_3715 and Dshi_3716 are separated by 127 nucleotides Dshi_3713: Dshi_3713 - hypothetical protein (RefSeq), at 118,469 to 118,945 _3713 Dshi_3714: Dshi_3714 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (RefSeq), at 118,926 to 119,519 _3714 Dshi_3715: Dshi_3715 - transcriptional regulator, LysR family (RefSeq), at 119,636 to 120,550 _3715 Dshi_3716: Dshi_3716 - UbiD family decarboxylase (RefSeq), at 120,678 to 122,087 _3716 Position (kb) 119 120 121Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 118.662 kb on + strand, within Dshi_3713at 118.666 kb on + strand, within Dshi_3713at 118.676 kb on - strand, within Dshi_3713at 118.704 kb on + strand, within Dshi_3713at 118.729 kb on - strand, within Dshi_3713at 118.729 kb on - strand, within Dshi_3713at 118.760 kb on + strand, within Dshi_3713at 118.768 kb on - strand, within Dshi_3713at 118.793 kb on + strand, within Dshi_3713at 118.793 kb on + strand, within Dshi_3713at 118.798 kb on + strand, within Dshi_3713at 118.816 kb on + strand, within Dshi_3713at 118.903 kb on - strandat 118.903 kb on - strandat 118.903 kb on - strandat 118.910 kb on + strandat 118.910 kb on + strandat 119.040 kb on + strand, within Dshi_3714at 119.058 kb on + strand, within Dshi_3714at 119.099 kb on + strand, within Dshi_3714at 119.120 kb on + strand, within Dshi_3714at 119.153 kb on + strand, within Dshi_3714at 119.196 kb on + strand, within Dshi_3714at 119.218 kb on - strand, within Dshi_3714at 119.219 kb on - strand, within Dshi_3714at 119.302 kb on + strand, within Dshi_3714at 119.312 kb on + strand, within Dshi_3714at 119.313 kb on - strand, within Dshi_3714at 119.318 kb on - strand, within Dshi_3714at 119.320 kb on - strand, within Dshi_3714at 119.457 kb on + strand, within Dshi_3714at 119.468 kb on + strandat 119.476 kb on + strandat 119.532 kb on - strandat 119.540 kb on - strandat 119.540 kb on - strandat 119.543 kb on + strandat 119.543 kb on + strandat 119.543 kb on + strandat 119.551 kb on - strandat 119.558 kb on + strandat 119.558 kb on + strandat 119.558 kb on + strandat 119.566 kb on - strandat 119.566 kb on - strandat 119.566 kb on - strandat 119.681 kb on - strandat 119.705 kb on - strandat 119.717 kb on + strandat 119.778 kb on + strand, within Dshi_3715at 119.778 kb on + strand, within Dshi_3715at 119.792 kb on - strand, within Dshi_3715at 119.792 kb on - strand, within Dshi_3715at 119.812 kb on + strand, within Dshi_3715at 119.858 kb on + strand, within Dshi_3715at 119.883 kb on - strand, within Dshi_3715at 119.903 kb on + strand, within Dshi_3715at 119.906 kb on - strand, within Dshi_3715at 119.906 kb on - strand, within Dshi_3715at 119.939 kb on - strand, within Dshi_3715at 119.953 kb on + strand, within Dshi_3715at 119.953 kb on + strand, within Dshi_3715at 119.953 kb on + strand, within Dshi_3715at 119.961 kb on - strand, within Dshi_3715at 119.961 kb on - strand, within Dshi_3715at 119.961 kb on - strand, within Dshi_3715at 119.961 kb on - strand, within Dshi_3715at 119.961 kb on - strand, within Dshi_3715at 119.961 kb on - strand, within Dshi_3715at 120.118 kb on - strand, within Dshi_3715at 120.163 kb on + strand, within Dshi_3715at 120.182 kb on - strand, within Dshi_3715at 120.266 kb on + strand, within Dshi_3715at 120.308 kb on - strand, within Dshi_3715at 120.377 kb on + strand, within Dshi_3715at 120.385 kb on - strand, within Dshi_3715at 120.391 kb on - strand, within Dshi_3715at 120.397 kb on + strand, within Dshi_3715at 120.397 kb on - strand, within Dshi_3715at 120.412 kb on - strand, within Dshi_3715at 120.415 kb on + strand, within Dshi_3715at 120.471 kb on + strandat 120.487 kb on + strandat 120.487 kb on + strandat 120.489 kb on + strandat 120.497 kb on - strandat 120.518 kb on + strandat 120.518 kb on - strandat 120.555 kb on - strandat 120.617 kb on + strandat 120.649 kb on - strandat 120.721 kb on - strandat 120.723 kb on - strandat 120.829 kb on - strand, within Dshi_3716at 120.840 kb on + strand, within Dshi_3716at 120.848 kb on - strand, within Dshi_3716at 120.883 kb on + strand, within Dshi_3716at 120.886 kb on - strand, within Dshi_3716at 120.891 kb on - strand, within Dshi_3716at 120.923 kb on - strand, within Dshi_3716at 120.947 kb on + strand, within Dshi_3716at 120.995 kb on + strand, within Dshi_3716at 120.995 kb on + strand, within Dshi_3716at 121.012 kb on + strand, within Dshi_3716at 121.020 kb on - strand, within Dshi_3716at 121.044 kb on - strand, within Dshi_3716at 121.044 kb on - strand, within Dshi_3716at 121.090 kb on - strand, within Dshi_3716at 121.137 kb on + strand, within Dshi_3716at 121.143 kb on - strand, within Dshi_3716at 121.148 kb on - strand, within Dshi_3716at 121.162 kb on + strand, within Dshi_3716at 121.162 kb on + strand, within Dshi_3716at 121.162 kb on + strand, within Dshi_3716at 121.164 kb on + strand, within Dshi_3716at 121.170 kb on - strand, within Dshi_3716at 121.194 kb on - strand, within Dshi_3716at 121.254 kb on + strand, within Dshi_3716at 121.262 kb on - strand, within Dshi_3716at 121.369 kb on + strand, within Dshi_3716at 121.393 kb on + strand, within Dshi_3716at 121.403 kb on + strand, within Dshi_3716at 121.411 kb on - strand, within Dshi_3716at 121.411 kb on - strand, within Dshi_3716at 121.447 kb on + strand, within Dshi_3716at 121.447 kb on + strand, within Dshi_3716at 121.463 kb on + strand, within Dshi_3716at 121.527 kb on + strand, within Dshi_3716at 121.535 kb on - strand, within Dshi_3716at 121.537 kb on - strand, within Dshi_3716

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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118,662 + Dshi_3713 0.40 -2.5
118,666 + Dshi_3713 0.41 +1.6
118,676 - Dshi_3713 0.43 +1.4
118,704 + Dshi_3713 0.49 +3.3
118,729 - Dshi_3713 0.55 -0.2
118,729 - Dshi_3713 0.55 +0.9
118,760 + Dshi_3713 0.61 -1.6
118,768 - Dshi_3713 0.63 +0.4
118,793 + Dshi_3713 0.68 +0.4
118,793 + Dshi_3713 0.68 +1.0
118,798 + Dshi_3713 0.69 +0.8
118,816 + Dshi_3713 0.73 +0.4
118,903 - +0.4
118,903 - +1.1
118,903 - -0.8
118,910 + -1.3
118,910 + +2.3
119,040 + Dshi_3714 0.19 +1.9
119,058 + Dshi_3714 0.22 +0.5
119,099 + Dshi_3714 0.29 +1.5
119,120 + Dshi_3714 0.33 +0.3
119,153 + Dshi_3714 0.38 -2.2
119,196 + Dshi_3714 0.45 +0.4
119,218 - Dshi_3714 0.49 -0.7
119,219 - Dshi_3714 0.49 -1.3
119,302 + Dshi_3714 0.63 +0.7
119,312 + Dshi_3714 0.65 +1.6
119,313 - Dshi_3714 0.65 +0.9
119,318 - Dshi_3714 0.66 +1.4
119,320 - Dshi_3714 0.66 -0.5
119,457 + Dshi_3714 0.89 +1.8
119,468 + +0.1
119,476 + +0.5
119,532 - +1.5
119,540 - +0.6
119,540 - -3.2
119,543 + +0.9
119,543 + -0.7
119,543 + -2.2
119,551 - -0.5
119,558 + -2.2
119,558 + +1.0
119,558 + +0.2
119,566 - +2.3
119,566 - -0.7
119,566 - -0.9
119,681 - +0.2
119,705 - +0.4
119,717 + -0.9
119,778 + Dshi_3715 0.16 -0.4
119,778 + Dshi_3715 0.16 +1.4
119,792 - Dshi_3715 0.17 +1.3
119,792 - Dshi_3715 0.17 -1.9
119,812 + Dshi_3715 0.19 +0.0
119,858 + Dshi_3715 0.24 +0.5
119,883 - Dshi_3715 0.27 -0.2
119,903 + Dshi_3715 0.29 -0.8
119,906 - Dshi_3715 0.30 -1.4
119,906 - Dshi_3715 0.30 +1.4
119,939 - Dshi_3715 0.33 -1.8
119,953 + Dshi_3715 0.35 +1.2
119,953 + Dshi_3715 0.35 -0.1
119,953 + Dshi_3715 0.35 +2.8
119,961 - Dshi_3715 0.36 -1.4
119,961 - Dshi_3715 0.36 -0.6
119,961 - Dshi_3715 0.36 -0.6
119,961 - Dshi_3715 0.36 -3.0
119,961 - Dshi_3715 0.36 +1.0
119,961 - Dshi_3715 0.36 -0.6
120,118 - Dshi_3715 0.53 -0.7
120,163 + Dshi_3715 0.58 -1.8
120,182 - Dshi_3715 0.60 -1.0
120,266 + Dshi_3715 0.69 +0.6
120,308 - Dshi_3715 0.73 -3.4
120,377 + Dshi_3715 0.81 +0.4
120,385 - Dshi_3715 0.82 +1.0
120,391 - Dshi_3715 0.83 -1.7
120,397 + Dshi_3715 0.83 +0.6
120,397 - Dshi_3715 0.83 -2.3
120,412 - Dshi_3715 0.85 -0.3
120,415 + Dshi_3715 0.85 +1.0
120,471 + -2.1
120,487 + +0.1
120,487 + -1.0
120,489 + +1.0
120,497 - +1.1
120,518 + +0.3
120,518 - +0.4
120,555 - +0.5
120,617 + -0.2
120,649 - +0.7
120,721 - +0.6
120,723 - -0.7
120,829 - Dshi_3716 0.11 +0.4
120,840 + Dshi_3716 0.11 +1.8
120,848 - Dshi_3716 0.12 +1.8
120,883 + Dshi_3716 0.15 +0.4
120,886 - Dshi_3716 0.15 +0.0
120,891 - Dshi_3716 0.15 +0.3
120,923 - Dshi_3716 0.17 +0.6
120,947 + Dshi_3716 0.19 -1.6
120,995 + Dshi_3716 0.22 -3.6
120,995 + Dshi_3716 0.22 -0.3
121,012 + Dshi_3716 0.24 +1.0
121,020 - Dshi_3716 0.24 +0.9
121,044 - Dshi_3716 0.26 -2.4
121,044 - Dshi_3716 0.26 -3.2
121,090 - Dshi_3716 0.29 -2.0
121,137 + Dshi_3716 0.33 -2.2
121,143 - Dshi_3716 0.33 +0.7
121,148 - Dshi_3716 0.33 +1.0
121,162 + Dshi_3716 0.34 +0.8
121,162 + Dshi_3716 0.34 -0.6
121,162 + Dshi_3716 0.34 +1.0
121,164 + Dshi_3716 0.34 -1.6
121,170 - Dshi_3716 0.35 -1.3
121,194 - Dshi_3716 0.37 +2.7
121,254 + Dshi_3716 0.41 -2.2
121,262 - Dshi_3716 0.41 -1.6
121,369 + Dshi_3716 0.49 +0.6
121,393 + Dshi_3716 0.51 +2.0
121,403 + Dshi_3716 0.51 -0.6
121,411 - Dshi_3716 0.52 -0.5
121,411 - Dshi_3716 0.52 +3.6
121,447 + Dshi_3716 0.55 +1.5
121,447 + Dshi_3716 0.55 -0.4
121,463 + Dshi_3716 0.56 -0.9
121,527 + Dshi_3716 0.60 -0.4
121,535 - Dshi_3716 0.61 +0.1
121,537 - Dshi_3716 0.61 -2.6

Or see this region's nucleotide sequence