Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3705 and Dshi_3706 overlap by 4 nucleotides Dshi_3706 and Dshi_3707 are separated by 11 nucleotides Dshi_3707 and Dshi_3708 are separated by 145 nucleotides Dshi_3708 and Dshi_3709 are separated by 1 nucleotides
Dshi_3705: Dshi_3705 - Integrase catalytic region (RefSeq), at 112,171 to 113,076
_3705
Dshi_3706: Dshi_3706 - transposase IS3/IS911 family protein (RefSeq), at 113,073 to 113,405
_3706
Dshi_3707: Dshi_3707 - transposase, IS4 family protein (RefSeq), at 113,417 to 113,626
_3707
Dshi_3708: Dshi_3708 - transcriptional regulator, AraC family (RefSeq), at 113,772 to 114,608
_3708
Dshi_3709: Dshi_3709 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 114,610 to 115,872
_3709
Position (kb)
113
114 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 113.453 kb on + strand, within Dshi_3707 at 113.486 kb on + strand, within Dshi_3707 at 113.486 kb on + strand, within Dshi_3707 at 113.494 kb on - strand, within Dshi_3707 at 113.501 kb on + strand, within Dshi_3707 at 113.509 kb on - strand, within Dshi_3707 at 113.509 kb on - strand, within Dshi_3707 at 113.514 kb on + strand, within Dshi_3707 at 113.519 kb on - strand, within Dshi_3707 at 113.522 kb on + strand, within Dshi_3707 at 113.530 kb on - strand, within Dshi_3707 at 113.530 kb on - strand, within Dshi_3707 at 113.538 kb on + strand, within Dshi_3707 at 113.553 kb on - strand, within Dshi_3707 at 113.553 kb on - strand, within Dshi_3707 at 113.577 kb on - strand, within Dshi_3707 at 113.577 kb on - strand, within Dshi_3707 at 113.577 kb on - strand, within Dshi_3707 at 113.577 kb on - strand, within Dshi_3707 at 113.582 kb on + strand, within Dshi_3707 at 113.582 kb on + strand, within Dshi_3707 at 113.588 kb on + strand, within Dshi_3707 at 113.590 kb on - strand, within Dshi_3707 at 113.592 kb on + strand, within Dshi_3707 at 113.606 kb on + strand at 113.606 kb on + strand at 113.614 kb on - strand at 113.614 kb on - strand at 113.618 kb on - strand at 113.624 kb on - strand at 113.628 kb on - strand at 113.634 kb on - strand at 113.702 kb on - strand at 113.707 kb on - strand at 113.709 kb on + strand at 113.709 kb on + strand at 113.717 kb on - strand at 113.751 kb on + strand at 113.765 kb on - strand at 113.777 kb on + strand at 113.790 kb on - strand at 113.792 kb on + strand at 113.807 kb on + strand at 113.807 kb on + strand at 113.807 kb on + strand at 113.810 kb on - strand at 113.815 kb on - strand at 113.815 kb on - strand at 113.840 kb on + strand at 113.843 kb on - strand at 113.843 kb on - strand at 113.872 kb on + strand, within Dshi_3708 at 113.933 kb on + strand, within Dshi_3708 at 113.934 kb on + strand, within Dshi_3708 at 113.942 kb on - strand, within Dshi_3708 at 113.949 kb on - strand, within Dshi_3708 at 113.972 kb on + strand, within Dshi_3708 at 114.008 kb on - strand, within Dshi_3708 at 114.020 kb on + strand, within Dshi_3708 at 114.044 kb on + strand, within Dshi_3708 at 114.147 kb on + strand, within Dshi_3708 at 114.191 kb on - strand, within Dshi_3708 at 114.191 kb on - strand, within Dshi_3708 at 114.191 kb on - strand, within Dshi_3708 at 114.260 kb on + strand, within Dshi_3708 at 114.315 kb on + strand, within Dshi_3708 at 114.318 kb on - strand, within Dshi_3708 at 114.325 kb on + strand, within Dshi_3708 at 114.356 kb on + strand, within Dshi_3708 at 114.369 kb on + strand, within Dshi_3708 at 114.372 kb on - strand, within Dshi_3708 at 114.384 kb on + strand, within Dshi_3708 at 114.415 kb on + strand, within Dshi_3708 at 114.507 kb on + strand, within Dshi_3708 at 114.559 kb on - strand at 114.589 kb on + strand at 114.617 kb on + strand at 114.621 kb on + strand at 114.625 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml remove 113,453 + Dshi_3707 0.17 +0.3 113,486 + Dshi_3707 0.33 +0.5 113,486 + Dshi_3707 0.33 +0.0 113,494 - Dshi_3707 0.37 -0.4 113,501 + Dshi_3707 0.40 -0.8 113,509 - Dshi_3707 0.44 -0.3 113,509 - Dshi_3707 0.44 +1.6 113,514 + Dshi_3707 0.46 +2.8 113,519 - Dshi_3707 0.49 -0.3 113,522 + Dshi_3707 0.50 +0.0 113,530 - Dshi_3707 0.54 +0.5 113,530 - Dshi_3707 0.54 +0.2 113,538 + Dshi_3707 0.58 +0.1 113,553 - Dshi_3707 0.65 +1.7 113,553 - Dshi_3707 0.65 -2.9 113,577 - Dshi_3707 0.76 +0.4 113,577 - Dshi_3707 0.76 +0.5 113,577 - Dshi_3707 0.76 -0.8 113,577 - Dshi_3707 0.76 -0.2 113,582 + Dshi_3707 0.79 -0.8 113,582 + Dshi_3707 0.79 +0.8 113,588 + Dshi_3707 0.81 -3.8 113,590 - Dshi_3707 0.82 -1.9 113,592 + Dshi_3707 0.83 -3.0 113,606 + +0.0 113,606 + -1.1 113,614 - -0.5 113,614 - -2.3 113,618 - -0.3 113,624 - +2.1 113,628 - +0.5 113,634 - -0.7 113,702 - -0.7 113,707 - -0.6 113,709 + +1.4 113,709 + +1.1 113,717 - -3.4 113,751 + -0.5 113,765 - +0.1 113,777 + -1.0 113,790 - -0.1 113,792 + +2.3 113,807 + -0.2 113,807 + +0.2 113,807 + +2.2 113,810 - -1.0 113,815 - +4.9 113,815 - -0.2 113,840 + -3.3 113,843 - +1.2 113,843 - -0.1 113,872 + Dshi_3708 0.12 +3.8 113,933 + Dshi_3708 0.19 -0.3 113,934 + Dshi_3708 0.19 +0.4 113,942 - Dshi_3708 0.20 -1.0 113,949 - Dshi_3708 0.21 -0.8 113,972 + Dshi_3708 0.24 -0.6 114,008 - Dshi_3708 0.28 -0.7 114,020 + Dshi_3708 0.30 -0.9 114,044 + Dshi_3708 0.32 -1.2 114,147 + Dshi_3708 0.45 -1.2 114,191 - Dshi_3708 0.50 -0.6 114,191 - Dshi_3708 0.50 -0.4 114,191 - Dshi_3708 0.50 +0.0 114,260 + Dshi_3708 0.58 -0.9 114,315 + Dshi_3708 0.65 +0.7 114,318 - Dshi_3708 0.65 +1.0 114,325 + Dshi_3708 0.66 -0.3 114,356 + Dshi_3708 0.70 -3.5 114,369 + Dshi_3708 0.71 -2.6 114,372 - Dshi_3708 0.72 -2.0 114,384 + Dshi_3708 0.73 -0.7 114,415 + Dshi_3708 0.77 -0.6 114,507 + Dshi_3708 0.88 +0.6 114,559 - +0.0 114,589 + +1.0 114,617 + -0.8 114,621 + +1.2 114,625 - -0.5
Or see this region's nucleotide sequence