Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3662

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3661 and Dshi_3662 are separated by 12 nucleotidesDshi_3662 and Dshi_3663 are separated by 367 nucleotides Dshi_3661: Dshi_3661 - integrase family protein (RefSeq), at 63,298 to 64,170 _3661 Dshi_3662: Dshi_3662 - putative transposase (RefSeq), at 64,183 to 65,385 _3662 Dshi_3663: Dshi_3663 - putative membrane protein of unknown function (RefSeq), at 65,753 to 66,727 _3663 Position (kb) 64 65 66Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 65.652 kb on + strandat 65.657 kb on + strandat 65.657 kb on + strandat 65.669 kb on + strandat 65.676 kb on + strandat 65.676 kb on + strandat 65.689 kb on - strandat 65.689 kb on - strandat 65.689 kb on - strandat 65.689 kb on - strandat 65.689 kb on - strandat 65.695 kb on - strandat 65.706 kb on + strandat 65.706 kb on + strandat 65.708 kb on + strandat 65.713 kb on + strandat 65.714 kb on - strandat 65.714 kb on - strandat 65.738 kb on - strandat 65.755 kb on + strandat 65.782 kb on - strandat 65.790 kb on + strandat 65.809 kb on + strandat 65.815 kb on + strandat 65.817 kb on + strandat 65.817 kb on + strandat 65.820 kb on + strandat 65.825 kb on - strandat 65.829 kb on + strandat 65.830 kb on - strandat 65.837 kb on - strandat 65.842 kb on + strandat 65.842 kb on + strandat 65.842 kb on + strandat 65.842 kb on + strandat 65.842 kb on + strandat 65.842 kb on + strandat 65.849 kb on + strandat 65.882 kb on - strand, within Dshi_3663at 65.891 kb on - strand, within Dshi_3663at 65.898 kb on + strand, within Dshi_3663at 65.898 kb on + strand, within Dshi_3663at 65.898 kb on + strand, within Dshi_3663at 65.898 kb on + strand, within Dshi_3663at 65.906 kb on - strand, within Dshi_3663at 65.906 kb on - strand, within Dshi_3663at 65.906 kb on - strand, within Dshi_3663at 65.906 kb on - strand, within Dshi_3663at 65.908 kb on + strand, within Dshi_3663at 65.924 kb on + strand, within Dshi_3663at 65.929 kb on + strand, within Dshi_3663at 65.929 kb on + strand, within Dshi_3663at 65.932 kb on - strand, within Dshi_3663at 65.935 kb on - strand, within Dshi_3663at 65.937 kb on + strand, within Dshi_3663at 65.937 kb on + strand, within Dshi_3663at 65.937 kb on + strand, within Dshi_3663at 65.937 kb on - strand, within Dshi_3663at 65.945 kb on - strand, within Dshi_3663at 65.945 kb on - strand, within Dshi_3663at 65.945 kb on - strand, within Dshi_3663at 65.945 kb on - strand, within Dshi_3663at 65.955 kb on - strand, within Dshi_3663at 65.961 kb on + strand, within Dshi_3663at 65.966 kb on + strand, within Dshi_3663at 65.966 kb on + strand, within Dshi_3663at 65.966 kb on + strand, within Dshi_3663at 65.969 kb on - strand, within Dshi_3663at 65.969 kb on - strand, within Dshi_3663at 65.969 kb on - strand, within Dshi_3663at 65.974 kb on - strand, within Dshi_3663at 65.983 kb on + strand, within Dshi_3663at 66.015 kb on + strand, within Dshi_3663at 66.020 kb on + strand, within Dshi_3663at 66.020 kb on + strand, within Dshi_3663at 66.023 kb on - strand, within Dshi_3663at 66.042 kb on + strand, within Dshi_3663at 66.052 kb on + strand, within Dshi_3663at 66.054 kb on + strand, within Dshi_3663at 66.058 kb on - strand, within Dshi_3663at 66.059 kb on + strand, within Dshi_3663at 66.060 kb on - strand, within Dshi_3663at 66.060 kb on - strand, within Dshi_3663at 66.060 kb on - strand, within Dshi_3663at 66.062 kb on - strand, within Dshi_3663at 66.080 kb on - strand, within Dshi_3663at 66.080 kb on - strand, within Dshi_3663at 66.082 kb on + strand, within Dshi_3663at 66.084 kb on + strand, within Dshi_3663at 66.089 kb on + strand, within Dshi_3663at 66.089 kb on + strand, within Dshi_3663at 66.089 kb on + strand, within Dshi_3663at 66.090 kb on - strand, within Dshi_3663at 66.090 kb on - strand, within Dshi_3663at 66.095 kb on - strand, within Dshi_3663at 66.097 kb on - strand, within Dshi_3663at 66.097 kb on - strand, within Dshi_3663at 66.097 kb on - strand, within Dshi_3663at 66.103 kb on + strand, within Dshi_3663at 66.103 kb on - strand, within Dshi_3663at 66.111 kb on - strand, within Dshi_3663at 66.115 kb on + strand, within Dshi_3663at 66.115 kb on + strand, within Dshi_3663at 66.132 kb on + strand, within Dshi_3663at 66.132 kb on + strand, within Dshi_3663at 66.140 kb on - strand, within Dshi_3663at 66.141 kb on + strand, within Dshi_3663at 66.169 kb on - strand, within Dshi_3663at 66.172 kb on - strand, within Dshi_3663at 66.172 kb on - strand, within Dshi_3663at 66.196 kb on - strand, within Dshi_3663at 66.203 kb on + strand, within Dshi_3663at 66.213 kb on + strand, within Dshi_3663at 66.215 kb on + strand, within Dshi_3663at 66.215 kb on + strand, within Dshi_3663at 66.215 kb on + strand, within Dshi_3663at 66.223 kb on - strand, within Dshi_3663at 66.223 kb on - strand, within Dshi_3663at 66.240 kb on + strand, within Dshi_3663at 66.281 kb on + strand, within Dshi_3663at 66.281 kb on + strand, within Dshi_3663at 66.289 kb on - strand, within Dshi_3663at 66.289 kb on - strand, within Dshi_3663at 66.326 kb on - strand, within Dshi_3663at 66.340 kb on + strand, within Dshi_3663at 66.343 kb on - strand, within Dshi_3663at 66.348 kb on - strand, within Dshi_3663at 66.353 kb on + strand, within Dshi_3663at 66.363 kb on + strand, within Dshi_3663at 66.372 kb on - strand, within Dshi_3663

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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65,652 + +0.2
65,657 + -0.7
65,657 + +0.1
65,669 + +0.1
65,676 + +0.4
65,676 + -0.0
65,689 - +0.4
65,689 - +1.2
65,689 - -1.2
65,689 - -0.0
65,689 - +0.1
65,695 - +0.6
65,706 + -5.1
65,706 + +1.1
65,708 + +0.3
65,713 + -1.4
65,714 - -1.6
65,714 - -0.5
65,738 - +1.0
65,755 + +2.0
65,782 - -0.1
65,790 + -0.4
65,809 + +0.8
65,815 + -0.6
65,817 + +1.1
65,817 + +3.4
65,820 + +0.7
65,825 - +0.6
65,829 + -0.4
65,830 - +1.5
65,837 - -0.0
65,842 + -2.7
65,842 + +0.3
65,842 + +0.1
65,842 + -2.2
65,842 + +0.6
65,842 + +0.6
65,849 + +0.2
65,882 - Dshi_3663 0.13 +0.5
65,891 - Dshi_3663 0.14 +2.8
65,898 + Dshi_3663 0.15 -0.7
65,898 + Dshi_3663 0.15 -0.6
65,898 + Dshi_3663 0.15 +1.0
65,898 + Dshi_3663 0.15 -1.0
65,906 - Dshi_3663 0.16 -0.8
65,906 - Dshi_3663 0.16 +0.2
65,906 - Dshi_3663 0.16 -1.4
65,906 - Dshi_3663 0.16 -1.0
65,908 + Dshi_3663 0.16 +0.3
65,924 + Dshi_3663 0.18 -0.2
65,929 + Dshi_3663 0.18 +0.5
65,929 + Dshi_3663 0.18 +1.4
65,932 - Dshi_3663 0.18 -0.4
65,935 - Dshi_3663 0.19 -1.0
65,937 + Dshi_3663 0.19 -3.4
65,937 + Dshi_3663 0.19 -0.5
65,937 + Dshi_3663 0.19 -1.0
65,937 - Dshi_3663 0.19 +0.6
65,945 - Dshi_3663 0.20 +2.2
65,945 - Dshi_3663 0.20 -0.1
65,945 - Dshi_3663 0.20 +0.6
65,945 - Dshi_3663 0.20 -0.2
65,955 - Dshi_3663 0.21 +0.4
65,961 + Dshi_3663 0.21 -0.2
65,966 + Dshi_3663 0.22 +0.8
65,966 + Dshi_3663 0.22 -0.2
65,966 + Dshi_3663 0.22 -1.4
65,969 - Dshi_3663 0.22 -0.1
65,969 - Dshi_3663 0.22 +1.7
65,969 - Dshi_3663 0.22 +2.6
65,974 - Dshi_3663 0.23 -1.3
65,983 + Dshi_3663 0.24 +0.2
66,015 + Dshi_3663 0.27 +0.4
66,020 + Dshi_3663 0.27 +1.9
66,020 + Dshi_3663 0.27 +0.6
66,023 - Dshi_3663 0.28 +0.1
66,042 + Dshi_3663 0.30 -2.1
66,052 + Dshi_3663 0.31 +0.0
66,054 + Dshi_3663 0.31 +2.0
66,058 - Dshi_3663 0.31 -1.6
66,059 + Dshi_3663 0.31 +1.8
66,060 - Dshi_3663 0.31 +2.3
66,060 - Dshi_3663 0.31 -2.4
66,060 - Dshi_3663 0.31 +0.3
66,062 - Dshi_3663 0.32 -0.8
66,080 - Dshi_3663 0.34 -0.5
66,080 - Dshi_3663 0.34 +0.1
66,082 + Dshi_3663 0.34 +0.8
66,084 + Dshi_3663 0.34 +0.5
66,089 + Dshi_3663 0.34 +0.6
66,089 + Dshi_3663 0.34 -0.4
66,089 + Dshi_3663 0.34 -2.8
66,090 - Dshi_3663 0.35 +0.0
66,090 - Dshi_3663 0.35 -1.3
66,095 - Dshi_3663 0.35 -0.5
66,097 - Dshi_3663 0.35 -0.3
66,097 - Dshi_3663 0.35 +0.1
66,097 - Dshi_3663 0.35 +0.8
66,103 + Dshi_3663 0.36 -2.7
66,103 - Dshi_3663 0.36 +1.0
66,111 - Dshi_3663 0.37 -0.1
66,115 + Dshi_3663 0.37 -0.5
66,115 + Dshi_3663 0.37 -1.0
66,132 + Dshi_3663 0.39 -0.5
66,132 + Dshi_3663 0.39 +3.0
66,140 - Dshi_3663 0.40 -4.0
66,141 + Dshi_3663 0.40 -0.1
66,169 - Dshi_3663 0.43 +0.1
66,172 - Dshi_3663 0.43 +4.3
66,172 - Dshi_3663 0.43 +2.1
66,196 - Dshi_3663 0.45 +1.4
66,203 + Dshi_3663 0.46 +0.8
66,213 + Dshi_3663 0.47 -1.8
66,215 + Dshi_3663 0.47 -1.4
66,215 + Dshi_3663 0.47 -0.3
66,215 + Dshi_3663 0.47 +0.1
66,223 - Dshi_3663 0.48 +0.6
66,223 - Dshi_3663 0.48 +0.2
66,240 + Dshi_3663 0.50 -1.1
66,281 + Dshi_3663 0.54 -0.0
66,281 + Dshi_3663 0.54 -0.8
66,289 - Dshi_3663 0.55 -0.1
66,289 - Dshi_3663 0.55 -0.7
66,326 - Dshi_3663 0.59 -3.1
66,340 + Dshi_3663 0.60 +0.3
66,343 - Dshi_3663 0.61 -1.2
66,348 - Dshi_3663 0.61 +2.3
66,353 + Dshi_3663 0.62 +0.7
66,363 + Dshi_3663 0.63 -0.9
66,372 - Dshi_3663 0.63 -0.0

Or see this region's nucleotide sequence