Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3588

Experiment: m.b. Benzalkonium Chloride 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3586 and Dshi_3587 are separated by 13 nucleotidesDshi_3587 and Dshi_3588 are separated by 3 nucleotidesDshi_3588 and Dshi_3589 are separated by 9 nucleotidesDshi_3589 and Dshi_R0052 are separated by 42 nucleotides Dshi_3586: Dshi_3586 - Cell envelope biogenesis YhbN (RefSeq), at 3,776,899 to 3,777,411 _3586 Dshi_3587: Dshi_3587 - hypothetical protein (RefSeq), at 3,777,425 to 3,778,027 _3587 Dshi_3588: Dshi_3588 - KpsF/GutQ family protein (RefSeq), at 3,778,031 to 3,778,993 _3588 Dshi_3589: Dshi_3589 - 3'-5' exonuclease (RefSeq), at 3,779,003 to 3,779,614 _3589 Dshi_R0052: Dshi_R0052 - tRNA-Leu (RefSeq), at 3,779,657 to 3,779,743 _R0052 Position (kb) 3778 3779Strain fitness (log2 ratio) -1 0 1 2 3 4at 3777.435 kb on + strandat 3777.443 kb on - strandat 3777.464 kb on - strandat 3779.785 kb on + strandat 3779.896 kb on + strandat 3779.897 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0001 mg/ml
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3,777,435 + +1.5
3,777,443 - +4.4
3,777,464 - +1.3
3,779,785 + -0.5
3,779,896 + -1.5
3,779,897 + +1.8

Or see this region's nucleotide sequence